User:Wayne Decatur/3ewsSLASH3g0h Morph methods: Difference between revisions
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Since the morph file that came back just had the protein from chain A from each endpoint structure, I added back the other parts from 3ews to model 1 and the other parts of 3g0h to Model 8. | Since the morph file that came back just had the protein from chain A from each endpoint structure, I added back the other parts from 3ews to model 1 and the other parts of 3g0h to Model 8. | ||
However, while that worked for model 8, the ligand of model 1 was off to the side because it needed translating to where model 1 was in the morph which is not the same as 3ews. To move, I copied the 3ews part from the | However, while that worked for model 8, the ligand of model 1 was off to the side because it needed translating to where model 1 was in the morph which is not the same as 3ews. To move, I copied the 3ews part from the morph and opened it in Swiss-PDB Viewer. Then with MagicFit allowed in 'Loading protein' under preference, I loaded the actual 3ews pdb file. Then I saved the new layer and extracted the information for ADP and placed that as the ADP heteratom information in the Morph file for model 1. | ||
Uploaded to Proteopedia [[Image:3ews3g0hmorphFIXED.pdb.gz]]. <br> | Uploaded to Proteopedia [[Image:3ews3g0hmorphFIXED.pdb.gz]]. <br> | ||
