User:Wayne Decatur/3ewsSLASH3g0h Morph methods: Difference between revisions
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Uploaded to Proteopedia [[Image:3ews3g0hmorphFIXED.pdb.gz]]. <br> | Uploaded to Proteopedia [[Image:3ews3g0hmorphFIXED.pdb.gz]]. <br> | ||
loaded '3ews3g0hmorphFIXED.pdb.gz' in Scene Authoring Tools.<br> | loaded '3ews3g0hmorphFIXED.pdb.gz' in Scene Authoring Tools.<br> | ||
[http://www.jbc.org/content/284/16/10296/F1.expansion.html Figure 1] | [http://www.jbc.org/content/284/16/10296/F1.expansion.html Figure 1] | ||
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*304-480 = Domain 2 and is darkred | *304-480 = Domain 2 and is darkred | ||
*chain e is darkseagreen | *chain e is darkseagreen | ||
When the animation played in Jmol the models corresponding to 3ews and 3g0h had regions that should be turns that were showing as helices and beta sheets and so I used structure command to fix. | |||
select 67-90:a and 1.1; | |||
structure TURN; | |||
select 78-80:a and 1.1; | |||
structure SHEET; | |||
select 1.1; | |||
cartoon on; | |||
select 297-304:a and 1.1; | |||
structure TURN; | |||
select 428-436:a and 1.1; | |||
structure TURN; | |||
select 1.1; | |||
cartoon on; | |||
<!-- | <!-- | ||
COMMENT | COMMENT | ||
--> | --> | ||
<scene name='User:Wayne_Decatur/3ewsSLASH3g0h_Morph_methods/3ewsto3g0hmorph/ | <scene name='User:Wayne_Decatur/3ewsSLASH3g0h_Morph_methods/3ewsto3g0hmorph/8'>TextToBeDisplayed</scene> | ||
<nowiki>[</nowiki>Control the animation with the 'animation' submenu on the menu that comes up if you click on the Jmol frank in the bottom right corner. Also, if the animation seems to be stuck, scroll in the bar on the right of your browser.<nowiki>]</nowiki> | <nowiki>[</nowiki>Control the animation with the 'animation' submenu on the menu that comes up if you click on the Jmol frank in the bottom right corner. Also, if the animation seems to be stuck, scroll in the bar on the right of your browser.<nowiki>]</nowiki> | ||
==Paper on the structure== | ==Paper on the structure== | ||
<ref group="xtra">PMID:19244245</ref><references group="xtra"/> | <ref group="xtra">PMID:19244245</ref><references group="xtra"/> | ||
