Molecular Playground/Procedures: Difference between revisions
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'''Capture the state script''' for your scene. In order to project your scene in Proteopedia, you will need to capture the state script into a file on your computer. When completed, the script file will be submitted to the MP team. Having a local copy on your computer also has the advantage that you can display the scene in the Jmol application, in a 1024 x 768 pixel window, just as it will appear when projected in MP. | '''Capture the state script''' for your scene. In order to project your scene in Proteopedia, you will need to capture the state script into a file on your computer. When completed, the script file will be submitted to the MP team. Having a local copy on your computer also has the advantage that you can display the scene in the Jmol application, in a 1024 x 768 pixel window, just as it will appear when projected in MP. | ||
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Choose a short '''name''' for the MP module you are developing, typically using the name of the molecule. This name will be used in the names of all the files making up the module, thereby making them easy to identify. If there need to be spaces within the name, replace them with underscores (or simply omit the spaces). For example, "your_molecule" or "yourMolecule". | Choose a short '''name''' for the MP module you are developing, typically using the name of the molecule. This name will be used in the names of all the files making up the module, thereby making them easy to identify. If there need to be spaces within the name, replace them with underscores (or simply omit the spaces). For example, "your_molecule" or "yourMolecule". | ||
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Create a '''folder''' (directory) on your computer to contain the files for this module, e.g. a folder named ''yourMolecule''. | Create a '''folder''' (directory) on your computer to contain the files for this module, e.g. a folder named ''yourMolecule''. | ||
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'''Test your state script in the Jmol application.''' | |||
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Put a copy of the [[PDB file]] used in your module in the ''yourMolecule'' folder. In Proteopedia, search for your [[PDB code]], and on the page titled with that PDB code, use the ''coordinates: save as pdb'' link to download the file. | Put a copy of the [[PDB file]] used in your module in the ''yourMolecule'' folder. In Proteopedia, search for your [[PDB code]], and on the page titled with that PDB code, use the ''coordinates: save as pdb'' link to download the file. | ||
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[[Category:Molecular Playground]] | [[Category:Molecular Playground]] | ||
