User:Wayne Decatur/Molecular modeling tools: Difference between revisions
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* [http://www.schrodinger.com/ Schrödinger Molecular Modeling Platform] - Small Molecule and Macromolecule Modeling and Simulations. | * [http://www.schrodinger.com/ Schrödinger Molecular Modeling Platform] - Small Molecule and Macromolecule Modeling and Simulations. | ||
* [http://accelrys.com/products/discovery-studio/ Accelrys Discovery Studio] - [http://blog.accelrys.com/2010/07/accelrys-symyx-merge/ Accelrys and Symyx merged effective July 1, 2010 | * [http://accelrys.com/products/discovery-studio/ Accelrys Discovery Studio] - [http://blog.accelrys.com/2010/07/accelrys-symyx-merge/ Accelrys and Symyx merged effective July 1, 2010]. | ||
* [http://www.rosettacommons.org/software/ Rosetta Software Suite] includes Modeling abilities and as a related package, there is [http://pyrosetta.org/ PyRosetta] - an interactive Python-based interface for Interactive Molecular Modeling. | * [http://www.rosettacommons.org/software/ Rosetta Software Suite] includes Modeling abilities and as a related package, there is [http://pyrosetta.org/ PyRosetta] - an interactive Python-based interface for Interactive Molecular Modeling. | ||
* [http://dasher.wustl.edu/tinker/ TINKER] - Software Tools for Molecular Design. | * [http://dasher.wustl.edu/tinker/ TINKER] - Software Tools for Molecular Design. | ||
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* [http://www.symyx.com/micro/jdraw/ Symyx JDraw Applet] - "In addition to accessing the no-fee Symyx Draw desktop application, students, teachers, and researchers working in a non-commercial setting can now access capabilities for rapidly drawing chemical structures and chemically intelligent queries in Web applications–capabilities built on industry-leading Symyx chemistry representation technology." | * [http://www.symyx.com/micro/jdraw/ Symyx JDraw Applet] - "In addition to accessing the no-fee Symyx Draw desktop application, students, teachers, and researchers working in a non-commercial setting can now access capabilities for rapidly drawing chemical structures and chemically intelligent queries in Web applications–capabilities built on industry-leading Symyx chemistry representation technology." | ||
* [http://chemagic.com/chemsketch/ CheMagic and the Jmol Virtual Molecular Model Kit] Jmol & JME enabling users to generate molecular models; user generated Jmol models can also be created using [http://www.acdlabs.com/products/draw_nom/ ACD/Labs’ ChemSketch]. | * [http://chemagic.com/chemsketch/ CheMagic and the Jmol Virtual Molecular Model Kit] Jmol & JME enabling users to generate molecular models; user generated Jmol models can also be created using [http://www.acdlabs.com/products/draw_nom/ ACD/Labs’ ChemSketch]. | ||
* [http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=146 Jmol on its own now has some ability to be directly used as a chemistry modeling kit] and there is a [http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=147 responsive docking ability] in the works. | * [http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=146 Jmol on its own now has some ability to be directly used as a chemistry modeling kit] and there is a [http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=147 responsive docking ability], similar to MDL Sculpt, in the works. | ||
==See Also== | ==See Also== | ||
[http://en.wikipedia.org/wiki/List_of_software_for_molecular_mechanics_modeling List of software for molecular mechanics modeling] at Wikipeida although thoroughness and how current it is are subject to question by the inclusion of RasMol which is simply a viewer with no modeling abilities that has been supplanted by better viewers such as Chime and Jmol not included on the list. | [http://en.wikipedia.org/wiki/List_of_software_for_molecular_mechanics_modeling List of software for molecular mechanics modeling] at Wikipeida although thoroughness and how current it is are subject to question by the inclusion of RasMol which is simply a viewer with no modeling abilities that has been supplanted by better viewers such as Chime and Jmol not included on the list. | ||
