User:Wayne Decatur/3kg2 Morph Methods: Difference between revisions
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Next I was trying to get the subunit A to B morph to load already close to the familiar arrangement, so I tried in PyMol to | Next I was trying to get the subunit A to B morph to load already close to the familiar arrangement, so I tried in PyMol to orient it like I wanted it and then save all states (just fyi...found I could show all states at same time on screen with 'set all_states,1' from - PyMol reference card). | ||
From http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg02004.html | From http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg02004.html | ||
found this series of commands (ENTERED ONE LINE AT A TIME) helped make a file with all models from PyMOL:<br> | found this series of commands (ENTERED ONE LINE AT A TIME) helped make a file with all models from PyMOL:<br> | ||
<br> | <br> | ||
split_states 3kg2atob | split_states 3kg2atob<br> | ||
delete 3kg2atob | delete 3kg2atob<br> | ||
alter all, segi = model[-4:] | alter all, segi = model[-4:]<br> | ||
rewind | rewind<br> | ||
save test.pdb, all | save test.pdb, all<br> | ||
'''However, this didn't save the orientation I had moved it to at the start.''' | |||
