User:Wayne Decatur/3kg2 Morph Methods: Difference between revisions
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m added How to save orientation of multiple models in PyMol |
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And so I again loaded the 3kg2 a to b morph (assigned secondary structure so cartoon look matched what I was used to looking at) and oriented like I wanted, then split them all and deleted original using commands above up until 'rewind' command, then ran the script I had saved on my drive, and then typed 'save_transformed all, test.pdb' | And so I again loaded the 3kg2 a to b morph (assigned secondary structure so cartoon look matched what I was used to looking at) and oriented like I wanted, then split them all and deleted original using commands above up until 'rewind' command, then ran the script I had saved on my drive, and then typed 'save_transformed all, test.pdb'<br> | ||
'''However, that didn't save orientation I expected.''' I tried it on a single pdb file (no multiple models in the file) that I did rotate and instead of using 'all' as the name I used the object and it did save it as a different orientation; however, strangely not the exact one I expected. Yet since it won't work with all, it wouldn't be worth it when Jmol can fix it right after it loads. | |||
