User:Wayne Decatur/kink-turn motif: Difference between revisions
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==Structures Containing the Motif== | ==Structures Containing the Motif== | ||
{{Kinkturnapplet}} | {{Kinkturnapplet}} | ||
* [[Large Ribosomal Subunit of Haloarcula|The Large Ribosomal Subunit]] contains 9 identified kink-turns<ref name="kleinref" /><ref name="lilleydatabase" />: <scene name='User:Wayne_Decatur/kink-turn_motif/Kt7withproteins/9'>Kt-7</scene> and Kt-7 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt7withproteins/10'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt15/2'>Kt-15</scene> and Kt-15 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt15/3'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt38/2'>Kt-38</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt42/5'>Kt-42</scene> and Kt-42 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt42/6'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt46/2'>Kt-46</scene> and Kt-46 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt46/3'>with bound proteins</scene>); <scene name='User:Wayne_Decatur/kink-turn_motif/Kt58/ | * [[Large Ribosomal Subunit of Haloarcula|The Large Ribosomal Subunit]] contains 9 identified kink-turns<ref name="kleinref" /><ref name="lilleydatabase" />: <scene name='User:Wayne_Decatur/kink-turn_motif/Kt7withproteins/9'>Kt-7</scene> and Kt-7 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt7withproteins/10'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt15/2'>Kt-15</scene> and Kt-15 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt15/3'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt38/2'>Kt-38</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt42/5'>Kt-42</scene> and Kt-42 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt42/6'>with bound proteins</scene>; <scene name='User:Wayne_Decatur/kink-turn_motif/Kt46/2'>Kt-46</scene> and Kt-46 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt46/3'>with bound proteins</scene>); <scene name='User:Wayne_Decatur/kink-turn_motif/Kt58/3'>Kt-58</scene> and Kt-58 <scene name='User:Wayne_Decatur/kink-turn_motif/Kt58/4'>with bound proteins</scene> of [[3cc2]]; Kt-78 as observed in [[2wh2]] (While present based on sequence comparison, Kt-78 is in a portion of the large subunit not visible in the crystal structure of [[3cc2]].) | ||
:* <scene name='User:Wayne_Decatur/kink-turn_motif/3cc2withkiturns/7'>The location of the eight kink-turns</scene> observed in the solved structure of [[Large Ribosomal Subunit of Haloarcula|the Haloarcula large ribosomal subunit]] shows they are on the surface of the subunit. (A ninth kink-turn, Kt-78, is not resolved in the ''Haloarcula marismortui'' structure but is also on the surface.) | :* <scene name='User:Wayne_Decatur/kink-turn_motif/3cc2withkiturns/7'>The location of the eight kink-turns</scene> observed in the solved structure of [[Large Ribosomal Subunit of Haloarcula|the Haloarcula large ribosomal subunit]] shows they are on the surface of the subunit. (A ninth kink-turn, Kt-78, is not resolved in the ''Haloarcula marismortui'' structure but is also on the surface.) | ||
:* See all of the 23S rRNA kink-turns and others on this page in greater detail following the appropriate links on [http://www.dundee.ac.uk/biocentre/nasg/kturn/kturns_known.php this page at a structural database for k-turn motifs in RNA by the Lilley group]<ref name="lilleydatabase" />. | :* See all of the 23S rRNA kink-turns and others on this page in greater detail following the appropriate links on [http://www.dundee.ac.uk/biocentre/nasg/kturn/kturns_known.php this page at a structural database for k-turn motifs in RNA by the Lilley group]<ref name="lilleydatabase" />. | ||
