Structure superposition tools: Difference between revisions
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==Visualizing Structural Alignments== | ==Visualizing Structural Alignments== | ||
<applet size='350' frame='true' align='right' caption='Structural alignment of [[1fsz]] with [[1tub]].' | <applet size='350' frame='true' align='right' caption='Structural alignment of [[1fsz]] with [[1tub]].' | ||
scene='Structural_alignment_tools/ | scene='Structural_alignment_tools/Dali_chains_ab/1' /> | ||
Structural alignments are usually visualized as the superimposed backbone traces of the aligned models. The example at right shows the bacterial cell division protein <font color="#d80000"><b>FtsZ</b></font> ([[1fsz]]:A) aligned by [[#Dali|Dali]] with <!--e0b000--><font color="#d0a000"><b>mammalian tubulin</b></font> ([[1tub]]:A). Sequence identity in the structurally aligned regions is about 13%. | Structural alignments are usually visualized as the superimposed backbone traces of the aligned models. The example at right shows the bacterial cell division protein <font color="#d80000"><b>FtsZ</b></font> ([[1fsz]]:A) aligned by [[#Dali|Dali]] with <!--e0b000--><font color="#d0a000"><b>mammalian tubulin</b></font> ([[1tub]]:A). Sequence identity in the structurally aligned regions is about 13%. | ||
*The non-aligned segments are white in the query (FtsZ) and thin in the target (tubulin). This scene is available in [[#Dali|Dali]] except that the target color has been changed to make it more distinct from the red query. (<scene name='Structural_alignment_tools/ | *The non-aligned segments are white in the query (FtsZ) and thin in the target (tubulin). This scene is available in [[#Dali|Dali]] except that the target color has been changed to make it more distinct from the red query. (<scene name='Structural_alignment_tools/Dali_chains_ab/1'>Restore initial scene</scene>.) | ||
*x | *x | ||
<jmol> | <jmol> | ||
<jmolButton> | <jmolButton> | ||
<script> | <script> | ||
script "display (within( | script "display (within(2.0, (:a and 1-50));" | ||
</script> | </script> | ||
<text>Step</text> | <text>Step</text> | ||
