Structure superposition tools: Difference between revisions
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===Example for Rigid Alignment=== | ===Example for Rigid Alignment=== | ||
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Summary for 1fszA vs. 1tubA | Summary for 1fszA vs. 1tubA | ||
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VAST</td><td>299</td><td>4.0 | VAST</td><td>299</td><td>4.0 | ||
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Summary for mammalian tubulin α vs. β, 1tubA vs. 1tubB: 40% sequence identity. | |||
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[[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | [[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | ||
