User:Wayne Decatur/Molecular modeling tools: Difference between revisions
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* [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand. | * [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand. | ||
* [[PyMOL]] is primarily a molecular viewer but allows some changes to be made. [http://www.pymol.org/news.html Schrödinger took over development of PyMol] after Warren DeLano's unexpected passing on November 3, 2009 | * [[PyMOL]] is primarily a molecular viewer but allows some changes to be made. [http://www.pymol.org/news.html Schrödinger took over development of PyMol] after Warren DeLano's unexpected passing on November 3, 2009 | ||
*[[Swiss-PDBViewer = DeepView]], a powerful and popular free modeling package (not open-source). Has an interface linked to [http://swissmodel.expasy.org/ SWISS-MODEL]. | * [[Swiss-PDBViewer = DeepView]], a powerful and popular free modeling package (not open-source). Has an interface linked to [http://swissmodel.expasy.org/ SWISS-MODEL]. | ||
* [http://salilab.org/modeller/ Modeller] | |||
* YASARA | * YASARA | ||
* UCSF Chimera | * UCSF Chimera | ||
