Molecular modeling and visualization software: Difference between revisions
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*[[Swiss-PDBViewer = DeepView]], a powerful and popular free modeling package (not open-source). Although menu-driven, there is a significant learning curve. | *[[Swiss-PDBViewer = DeepView]], a powerful and popular free modeling package (not open-source). Although menu-driven, there is a significant learning curve. | ||
* [http://www.ysbl.york.ac.uk/~emsley/coot/ Coot] (Crystallographic Object-Oriented Toolkit -- also at [http://code.google.com/p/coot/ Google Code]), is very popular among crystallographers for building macromolecular models from electron density maps. Open source (GNU GPL). | *[http://www.ysbl.york.ac.uk/~emsley/coot/ Coot] (Crystallographic Object-Oriented Toolkit -- also at [http://code.google.com/p/coot/ Google Code]), is very popular among crystallographers for building macromolecular models from electron density maps. Open source (GNU GPL). | ||
* [http://xray.bmc.uu.se/~alwyn/index.html O] has long been popular with crystallographers for building macromolecular models from electron density maps. Free. (License unclear.) | *[http://xray.bmc.uu.se/~alwyn/index.html O] has long been popular with crystallographers for building macromolecular models from electron density maps. Free. (License unclear.) | ||
*[http://salilab.org/modeller/ Modeller] | |||
==See Also== | ==See Also== | ||
*[[Homology model]] | |||
*[[PyMOL]], an open-source molecular visualization program, extremely popular with crystallographers, that requires a subscription fee. Effective use of PyMOL requires that you become familiar with highly abbreviated menus, and/or a command scripting language. | *[[PyMOL]], an open-source molecular visualization program, extremely popular with crystallographers, that requires a subscription fee. Effective use of PyMOL requires that you become familiar with highly abbreviated menus, and/or a command scripting language. | ||
*[http://www.weizmann.ac.il/ISPC/eMovie.html eMovie] is a plugin for PyMOL that facilitates creation of [[Morphs#True_Movies|true movies]] using a storyboard approach. | *[http://www.weizmann.ac.il/ISPC/eMovie.html eMovie] is a plugin for PyMOL that facilitates creation of [[Morphs#True_Movies|true movies]] using a storyboard approach. | ||
*World Index of Molecular Visualization Resources, [http://molvisindex.org MolVisIndex.Org], which has links to more than one hundred free and commercial molecular visualization software packages. | *World Index of Molecular Visualization Resources, [http://molvisindex.org MolVisIndex.Org], which has links to more than one hundred free and commercial molecular visualization software packages. | ||
