Structure superposition tools: Difference between revisions
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Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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*'''N.B. Database of structure neighbors has not been updated since 2004. Java applet for viewing results is not working in Sept. 2010. Finding structure neighbors from the entire PDB database ("ALL") appears to have been broken since 2001.''' | *'''N.B. Database of structure neighbors has not been updated since 2004. Java applet for viewing results is not working in Sept. 2010. Finding structure neighbors from the entire PDB database ("ALL") appears to have been broken since 2001.''' | ||
*Rigid alignment: ONLY (according to FATCAT<ref name="fatcat" />) | *Rigid alignment: ONLY (according to FATCAT<ref name="fatcat" />) | ||
*Align DNA? NO. | |||
*Align multiple protein chains? NO. Aligns one pair of chains at a time. | |||
*Structure-based sequence alignment: YES. | *Structure-based sequence alignment: YES. | ||
*Visualization: does not appear to work on the website, but visualization in Jmol works when the jCE option is used in the ''Calculate Structural Alignment'' java software (see below). | *Visualization: does not appear to work on the website, but visualization in Jmol works when the jCE option is used in the ''Calculate Structural Alignment'' java software (see below). | ||
