User:Wayne Decatur/Haloarcula Large Ribosomal Subunit: Difference between revisions

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===The rRNA domains:===
===The rRNA domains:===
The secondary structure map of Haloarcula 23S rRNA (below)<ref>This figure generated from making a simpler schematic version of [http://people.biochem.umass.edu/fournierlab/3dmodmap/hmarlsu2dframes.php a detailed secondary structure of Haloarcula marismortui 23S rRNA] based on a secondary structure map available at [http://www.rna.ccbb.utexas.edu/ the Gutell lab Comparative RNA Website.]</ref> clearly shows six large RNA domains extending off a large major loop.<br>
The secondary structure map<ref>This figure generated from making a simpler schematic version of [http://people.biochem.umass.edu/fournierlab/3dmodmap/hmarlsu2dframes.php a detailed secondary structure of Haloarcula marismortui 23S rRNA] based on a secondary structure map available at [http://www.rna.ccbb.utexas.edu/ the Gutell lab Comparative RNA Website.]</ref> of Haloarcula 23S rRNA (below) clearly shows six large RNA domains extending off a large major loop.<br>
[[Image:Schematic hmarlsu.jpg|left]]
[[Image:Schematic hmarlsu.jpg|left]]
<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1s72ALPHACplusccapurowithCERTAINSIDECHAINS.PDB' size='540' frame='true' align='right' scene='User:Wayne_Decatur/Sandbox_Haloarcula_Ribosomal_Large_Subunit/1s72beststart/3' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Large Ribosomal Subunit''' ([[1s72]]), resolution 2.4&Aring; (<scene name='User:Wayne_Decatur/Sandbox_Haloarcula_Ribosomal_Large_Subunit/1s72beststart/3'>initial scene</scene>). <br>
<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1s72ALPHACplusccapurowithCERTAINSIDECHAINS.PDB' size='540' frame='true' align='right' scene='User:Wayne_Decatur/Sandbox_Haloarcula_Ribosomal_Large_Subunit/1s72beststart/3' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Large Ribosomal Subunit''' ([[1s72]]), resolution 2.4&Aring; (<scene name='User:Wayne_Decatur/Sandbox_Haloarcula_Ribosomal_Large_Subunit/1s72beststart/3'>initial scene</scene>). <br>
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