User:Wayne Decatur/I-Ppo Morph Methods: Difference between revisions

Next I combined the aligned edited 1evx file with the aligned edited unbound DNA file to match 1a73. At first I thought the [http://www2.molmovdb.org/wiki/info/index.php/Morph_Server Yale Morph Server] wouldn't work because I had DNA in the structure but in the FAQ I found a link to the [http://molmovdb.org/cgi-bin/multichain.cgi Morph Server for multiple subunits and nucleic acids] that sounded perfectly suited; however, it didn't seem to ever send anything back. So I went looking for more explanation and couldn't figure out what was wrong. So I looked at what the FAQ called 'the Beta server'. That server said on its page [http://www.molmovdb.org/cgi-bin/beta.cgi here] that is was the 'Server for morphing complexes' and they wanted to implement it working for nucleic acids "in a few weeks". (I also found that at the time, the link to the 'multi chain server' [http://www2.molmovdb.org/wiki/info/index.php/Morph_Server here] went to that server too.) On a lark, I tried it with the proteins (using the same file I submitted to the other server) and they came right back nicely morphed. Then I used it to submit the same files and they came back nicely morphed. IT WORKED.