Jmol/Visualizing large molecules: Difference between revisions
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==Maximum Size Per Model== | ==Maximum Size Per Model== | ||
Strictly speaking, the format of [[PDB files]] is limited to 99,999 atoms in a single model, because there are only 5 columns allocated to atom serial numbers. [[3cc2]] is a model of a large ribosomal subunit containing 99,049 atoms (close to the limit for a single PDB file). Most likely it will display in Jmol when you go to that page. Jmol ignores the atom serial number, columns 7-11 in the PDB file, instead assigning its own '' | Strictly speaking, the format of [[PDB files]] is limited to 99,999 atoms in a single model, because there are only 5 columns allocated to atom serial numbers. [[3cc2]] is a model of a large ribosomal subunit containing 99,049 atoms (close to the limit for a single PDB file). Most likely it will display in Jmol when you go to that page. Jmol ignores the atom serial number, columns 7-11 in the PDB file, instead assigning its own ''atomIndex'' number. Jmol can handle PDB files containing >100,000 atoms. | ||
==Multiple Model Files== | ==Multiple Model Files== | ||
