Structure superposition tools: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 5: | Line 5: | ||
There are two common applications of structural alignment servers: | There are two common applications of structural alignment servers: | ||
# '''Pairwise alignment'''. All servers listed below enable you to upload two 3D models (or specify them from the [[PDB]]) and generate a structural alignment. | # '''Pairwise alignment'''. All servers listed below enable you to upload two 3D models (or specify them from the [[PDB]]) and generate a structural alignment. | ||
# '''Structure neighbors'''. Some servers (notably [[#Dali]], ) enable you to upload one 3D model (or specify one in the [[PDB]]) and generate a list of the closest structures in the [[PDB]], based on pairwise structural alignments between your query structure versus all structures in the [[PDB]]. | # '''Structure neighbors'''. Some servers (notably [[#Dali|Dali]], [[#FATCAT|FATCAT]], and [[#VAST|VAST]]) enable you to upload one 3D model (or specify one in the [[PDB]]) and generate a list of the closest structures in the [[PDB]], based on pairwise structural alignments between your query structure versus all structures in the [[PDB]]. | ||
Wikipedia offers a [http://en.wikipedia.org/wiki/Structural_alignment_software list of structural alignment software packages] and an overview of [http://en.wikipedia.org/wiki/Structural_alignment structural alignment]. Hasegawa and Holm reviewed structural alignment methods in 2009<ref>PMID: 19481444</ref>. | Wikipedia offers a [http://en.wikipedia.org/wiki/Structural_alignment_software list of structural alignment software packages] and an overview of [http://en.wikipedia.org/wiki/Structural_alignment structural alignment]. Hasegawa and Holm reviewed structural alignment methods in 2009<ref>PMID: 19481444</ref>. | ||
