Structure superposition tools: Difference between revisions
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CE and FATCAT align only one chain at a time. DaliLite appears to align multiple chains, although the output is confusing and not clearly labeled. [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] can align multiple chains, including both protein and DNA chains in a single alignment (''Iterative Magic Fit''). | CE and FATCAT align only one chain at a time. DaliLite appears to align multiple chains, although the output is confusing and not clearly labeled. [[#DeepView = Swiss-PDBViewer|DeepView = Swiss-PDBViewer]] can align multiple chains, including both protein and DNA chains in a single alignment (''Iterative Magic Fit''). | ||
====One | ====One chain vs. many other chains==== | ||
[[#Dali|Dali]], [[#FATCAT|FATCAT]], and [[#VAST|VAST]] enable you to upload a 3D model, or specify a [[PDB code]], and obtain a list of the most similar structures in the [[PDB]], called '''structure neighbors'''. | [[#Dali|Dali]], [[#FATCAT|FATCAT]], and [[#VAST|VAST]] enable you to upload a 3D model, or specify a [[PDB code]], and obtain a list of the most similar structures in the [[PDB]], called '''structure neighbors'''. | ||
