Molecular modeling and visualization software: Difference between revisions
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*[[Chime]], a free browser plugin released in 1996, now superceded by [[Jmol]]. Not open-source. | *[[Chime]], a free browser plugin released in 1996, now superceded by [[Jmol]]. Not open-source. | ||
*[http://www.molsoft.com/icm_browser.html ICM-Browser] and [http://www.molsoft.com/activeicm.html the free plugi-in ActiveICM both by Molsoft] are now used to view enhanced content in [http://mcponline.org/content/current Molecular and Cellular Proteomics Journal] and [http://www.plos.org/ PLoS (Public Library of Science)] series of journals, such as [http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011905 an example is enhanced version that is viewable in a browser] and [http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000426 this example article with separate Datapack]. Requires a download and/or plugin. Not open-source. | *[http://www.molsoft.com/icm_browser.html ICM-Browser] and [http://www.molsoft.com/activeicm.html the free plugi-in ActiveICM both by Molsoft] are now used to view enhanced content in [http://mcponline.org/content/current Molecular and Cellular Proteomics Journal] and [http://www.plos.org/ PLoS (Public Library of Science)] series of journals, such as [http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011905 an example is enhanced version that is viewable in a browser] and [http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000426 this example article with separate Datapack]. Requires a download and/or plugin. Not open-source. | ||
*[http://hollow.sourceforge.net/ HOLLOW] facilitates the production of surface images of proteins. You input a PDB file and get out a PDB file of dummy water atoms that forms a "cast" of the voids and channels of a protein. | *[http://hollow.sourceforge.net/ HOLLOW] is not a stand-alone molecular visualization program; however, it facilitates the production of surface images of proteins. You input a PDB file and get out a PDB file of dummy water atoms that forms a "cast" of the voids and channels of a protein. | ||
==Free molecular modeling software== | ==Free molecular modeling software== | ||
