Homology modeling servers: Difference between revisions
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Untemplated target residues (aligned with a gap in the template sequence) are present in the 3D model, and are indicated with a high [[temperature value]]. This appears to be true regardless of the length of the untemplated region. Long untemplated regions may occur in the 3D model as a long hairpin loop extending away from a compact domain, making their lack of template fairly obvious. | Untemplated target residues (aligned with a gap in the template sequence) are present in the 3D model, and are indicated with a high [[temperature value]]. This appears to be true regardless of the length of the untemplated region. Long untemplated regions may occur in the 3D model as a long hairpin loop extending away from a compact domain, making their lack of template fairly obvious. | ||
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The 3D model takes a shortcut, skipping the residues in the template aligned with the gap. This causes the 3D template to bulge away from the 3D target model in this region.* | The 3D model takes a shortcut, skipping the residues in the template aligned with the gap. This causes the 3D template to bulge away from the 3D target model in this region, and permits registration to be maintained.* | ||
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<font color="red">Caution:</font> | <font color="red">Caution:</font> | ||
