DNA polymerase: Difference between revisions
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== 3D Structures of DNA polymerase == | == 3D Structures of DNA polymerase == | ||
''Update June 2011'' | |||
===Family A – replicative and repair Dpo=== | ===Family A – replicative and repair Dpo=== | ||
[[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA - Enterobacteria phage T7<br /> | [[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA - Enterobacteria phage T7<br /> | ||
[[1t7p]] - T7Dpo (mutant) + thioredoxin + DNA<br /> | |||
[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7]]p - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br /> | [[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7]]p - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br /> | ||
[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br /> | [[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br /> | ||
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[[3ikm]] - hDpo γ1+γ2 - human<br /> | [[3ikm]] - hDpo γ1+γ2 - human<br /> | ||
[[3ikl]], [[2g4c]] - hDpo γ2<br /> | [[3ikl]], [[2g4c]] - hDpo γ2<br /> | ||
[[3g6v]], [[3g6x]], [[3g6y]] - hDpo ι + DNA<br /> | |||
[[3gdx]] - hDpo β + DNA | |||
===Family B – 3’-5’ exonuclease activity=== | ===Family B – 3’-5’ exonuclease activity=== | ||
[[1ih7]] – EpDpo - Enterobacteria phage RB69<br /> | [[1ih7]] – EpDpo - Enterobacteria phage RB69<br /> | ||
[[3cfo]] – EpDpo (mutant)<br /> | |||
[[1waf]], [[1waj]] - EpDpo + nucleotide<br /> | [[1waf]], [[1waj]] - EpDpo + nucleotide<br /> | ||
[[3nci]], [[3lds]], [[3l8b]], [[3cq8]] - EpDpo (mutant) + DNA<br /> | [[3nci]], [[3lds]], [[3l8b]], [[3cq8]],[[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]] - EpDpo (mutant) + DNA<br /> | ||
[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]] - EpDpo (mutant) + DNA + nucleotide<br /> | [[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]] - EpDpo (mutant) + DNA + nucleotide<br /> | ||
[[1clq]] - EpDpo + DNA + nucleotide<br /> | [[1clq]] - EpDpo + DNA + nucleotide<br /> | ||
[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | [[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]] - EpDpo (mutant) + DNA + nucleotide analog<br /> | ||
[[2atq]] – EpDpo + GP32<br /> | |||
[[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br /> | [[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br /> | ||
[[1noz]] – T4Dpo residues 1-388<br /> | [[1noz]] – T4Dpo residues 1-388<br /> | ||
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[[2keb]] - hDpo αB - NMR <br /> | [[2keb]] - hDpo αB - NMR <br /> | ||
[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain- NMR<br /> | [[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain- NMR<br /> | ||
[[1zqj]] – hDpo β + DNA<br /> | |||
[[3e0j]] - hDpo δ2+δ3<br /> | [[3e0j]] - hDpo δ2+δ3<br /> | ||
[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br /> | [[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br /> | ||
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[[2rdi]] - SsDpo IV - ''Sulfolobus solfataricus''<br /> | [[2rdi]] - SsDpo IV - ''Sulfolobus solfataricus''<br /> | ||
[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsDpo IV (mutant) + DNA + nucleotide<br /> | [[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsDpo IV (mutant) + DNA + nucleotide<br /> | ||
[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]] - SsDpo IV + DNA<br /> | [[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]] - SsDpo IV + DNA<br /> | ||
[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]] - SsDpo IV + DNA + nucleotide<br /> | [[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]] - SsDpo IV + DNA + nucleotide<br /> | ||
[[3fds]] – SsDpo IV + PCNA B + PCNA C<br /> | [[3fds]] – SsDpo IV + PCNA B + PCNA C<br /> | ||
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[[3e0d]] - TaDpo III α subunit + DNA<br /> | [[3e0d]] - TaDpo III α subunit + DNA<br /> | ||
[[3f2b]], [[3f2c]], [[3f2d]] – Dpo III α subunit + DNA + nucleotide – ''Geobacillus kaustophilus''<br /> | [[3f2b]], [[3f2c]], [[3f2d]] – Dpo III α subunit + DNA + nucleotide – ''Geobacillus kaustophilus''<br /> | ||
[[1zd7]], [[1zde]] - Dpo III α subunit – Synechocystis<br /> | [[1zd7]], [[1zde]], [[3nzm]] - Dpo III α subunit – Synechocystis<br /> | ||
[[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br /> | [[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br /> | ||
[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br /> | [[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br /> | ||
[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br /> | [[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br /> | ||
[[1vpk]] - TmDpo III β subunit<br /> | [[1vpk]] - TmDpo III β subunit<br /> | ||
[[2gno]] - TmDpo III γ subunit<br /> | |||
[[2keq]] - Dpo III α subunit – ''Nostoc punctiforme''<br /> | |||
[[3d1f]] - EcDpo III β subunit + polypeptide | |||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
