Calculate structure: Difference between revisions
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'''Detection of Known γ-turns''' | '''Detection of Known γ-turns''' | ||
''Calculate structure'' only identifies one out of the eleven classic γ-turns identified by Miner-White et. al.<ref name="Miner" />. The hbond of the classic γ-turn in thermolysin is displayed and the T segment of the turn is listed in the summary displayed in the console. | ''Calculate structure'' only identifies one out of the eleven classic γ-turns identified by Miner-White et. al.<ref name="Miner" />. The hbond of the classic γ-turn in thermolysin is displayed and the T segment of the turn is listed in the summary displayed in the console. (select protein; calculate structure; cartoon; color structure; calculate hbonds structure) | ||
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.); <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene>. | * <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.); <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene>. | ||
The hbonds were not identified by ''Calculate structure'' in the other ten classic turns and the T segments were not included in the summary displayed in the console. Several illustrations are given. | The hbonds were not identified by ''Calculate structure'' in the other ten classic turns and the T segments were not included in the summary displayed in the console. Several illustrations are given. | ||
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> | * <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> | ||
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> | * <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> | ||
* Lactate dehydrogenase (6LDH, supersedes 4LDH) - three classic γ-turns high lighted. | * <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted. | ||
<blockquote> | <blockquote> | ||
* 101-106 | * 101-106 | ||
