Calculate structure: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 93: | Line 93: | ||
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.); <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene> - run calculate 'hbonds structure' to confirm presence of hbond; reported torsional angles are 75,-54. | * <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.); <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene> - run calculate 'hbonds structure' to confirm presence of hbond; reported torsional angles are 75,-54. | ||
The hbonds were not identified by ''Calculate structure'' in the other ten classic turns and the T segments were not included in the summary displayed in the console. Several illustrations are given. | The hbonds were not identified by ''Calculate structure'' in the other ten classic turns and the T segments were not included in the summary displayed in the console. Several illustrations are given. | ||
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run calculate 'hbonds structure' to confirm absence of hbond; reported torsional angles are 93, -70. | * <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run calculate 'hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70. | ||
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> | * <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75. | ||
* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted. | * <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted. | ||
<blockquote> | <blockquote> | ||
