Calculate structure: Difference between revisions

Line 93:

* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run 'calculate hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70.

* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75.

* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even ~~a reverse~~ γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.

* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even an inverse γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.

* 103-106 - T: 102_103 is on the summary, but as indicated by the hbond 101-104 forms a β-turn.

* 208-210 - T: 207_208 is on the summary, but as indicated by the hbond 206-209 forms a β-turn.

* 278-280 - T: 275_276 is the ~~clo9seste~~ segment on the summary.

* 278-280 - T: 275_276 is the closest segment on the summary.

</blockquote>

* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN) - summary contains G: 122_124 as expected based on the coloration; <scene name='Calculate_structure/Flavodoxin2/1'>Isolated turn</scene> - torsional angles reported for 3FXN were 35, -94. Classic γ-turn partially nested in a Π-helix with the helix having priority over the turn.

* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN) - summary contains G: 122_124 as expected based on the coloration; <scene name='Calculate_structure/Flavodoxin2/1'>Isolated turn</scene> - torsional angles reported for 3FXN were 35, -94. Classic γ-turn partially nested in a 3<sub>10</sub>-helix with the helix having priority over the turn.

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@@ Line 93: / Line 93: @@
 * <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run 'calculate hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70.
 * <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75.
-* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even a reverse γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.
+* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even an inverse γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.
 <blockquote>
 * 103-106 - T: 102_103 is on the summary, but as indicated by the hbond 101-104 forms a β-turn.
 * 208-210 - T: 207_208 is on the summary, but as indicated by the hbond 206-209 forms a β-turn.
-* 278-280 - T: 275_276 is the clo9seste segment on the summary.
+* 278-280 - T: 275_276 is the closest segment on the summary.
 </blockquote>
-* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN) - summary contains G: 122_124 as expected based on the coloration; <scene name='Calculate_structure/Flavodoxin2/1'>Isolated turn</scene> - torsional angles reported for 3FXN were 35, -94. Classic γ-turn partially nested in a Π-helix with the helix having priority over the turn.
+* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN) - summary contains G: 122_124 as expected based on the coloration; <scene name='Calculate_structure/Flavodoxin2/1'>Isolated turn</scene> - torsional angles reported for 3FXN were 35, -94. Classic γ-turn partially nested in a 3<sub>10</sub>-helix with the helix having priority over the turn.