Calculate structure: Difference between revisions

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486-490,493-497,726-730,771-775,776-779,804-809; 524-527,593-596,610-613,633-636,636-639,668-671,675-678,682-685,693-696,748-751,751-754,820-826
486-490,493-497,726-730,771-775,776-779,804-809; 524-527,593-596,610-613,633-636,636-639,668-671,675-678,682-685,693-696,748-751,751-754,820-826
   
   
'''Detection of Known γ-turns'''
'''Other proteins to analyze'''
Out of the eleven classic γ-turns identified by Miner-White et. al.<ref name="Miner" /> ''Calculate structure'' only identifies and displays the hbond of thermolysin. Miner-White et. al. indicate that two hbonds are present in the classic γ-turn in thermolysin (They also state that the turn in thermolysin is the only one of the eleven that has two hbonds.), but ''Calculate structure'' only displays one and the T segment of the turn is '''not''' listed in the summary displayed in the console. <center>select protein; calculate structure; cartoon; color structure; calculate hbonds structure</center>
These proteins are among the proteins in which Miner-White et. al.<ref name="Miner" /> identified classic γ-turn. There are green links to view the classic classic γ-turn. <center>select protein; calculate structure; cartoon; color structure; calculate hbonds structure</center>
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.);  <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene> - run 'calculate hbonds structure' to confirm presence of hbond; reported torsional angles are 75,-54.  
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.);  <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene> - run 'calculate hbonds structure' to confirm presence of hbond; reported torsional angles are 75,-54.  
The hbonds were not identified by ''Calculate structure'' in the other ten classic turns  and the T segments were not included in the summary displayed in the console. Several illustrations are given.
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run 'calculate hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70.
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run 'calculate hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70.
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75.
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75.
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