Calculate structure: Difference between revisions

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'''Other proteins to analyze'''
'''Other proteins to analyze'''
These proteins are among the proteins in which Miner-White et. al.<ref name="Miner" /> identified classic γ-turn. There are green links to view the classic classic γ-turn. <center>select protein; calculate structure; cartoon; color structure; calculate hbonds structure</center>
These proteins are among the proteins in which Miner-White et. al.<ref name="Miner" /> identified classic γ-turn. <center>select protein; calculate structure; cartoon; color structure; calculate hbonds structure</center>
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.);  <scene name='Calculate_structure/Thermolysin/2'>Isolated view</scene> - run 'calculate hbonds structure' to confirm presence of hbond; reported torsional angles are 75,-54.  
* <scene name='Calculate_structure/Thermolysin2/1'>Thermolysin</scene> (8TLN, which now supersedes 3TLN which was actually used by Miner-White et. al.).  
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>; <scene name='Calculate_structure/Alpha_lytic2/1'>Isolated turn</scene> - run 'calculate hbonds structure' to confirm absence of intra-turn hbond; reported torsional angles are 93, -70.
* <scene name='Calculate_structure/Alpha_lytic/2'>α-lytic protease</scene>.
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA); <scene name='Calculate_structure/Proteinase_a2/1'>Isolated turn</scene> - reported torsional angles are 80, -75.
* <scene name='Calculate_structure/Proteinase_a/1'>Proteinase A</scene> (2SGA).
* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even an inverse γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.   
* <scene name='Calculate_structure/Ldh/1'>Lactate dehydrogenase</scene> (6LDH, supersedes 4LDH) - three classic γ-turns high lighted; <scene name='Calculate_structure/Ldh2/1'>Isolate turns</scene> - none have the appearance of a γ-turn and none have torsional angles that a classic or even an inverse γ-turn would have. Substantial differences between 4LDH and 6LDH could account for the lack of γ-turns in these three sequences.   
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* 278-280 - T: 275_276 is the closest segment on the summary.
* 278-280 - T: 275_276 is the closest segment on the summary.
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* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN) - summary contains G: 122_124 as expected based on the coloration; <scene name='Calculate_structure/Flavodoxin2/1'>Isolated turn</scene> - torsional angles reported for 3FXN were 35, -94. Classic γ-turn partially nested in a 3<sub>10</sub>-helix with the helix having priority over the turn.
* <scene name='Calculate_structure/Flavodoxin/1'>Flavodoxin</scene> (5NLL, supersedes 3FXN).




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