Calculate structure: Difference between revisions
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T : A:115_A:117 <scene name='Calculate_structure/Turn_114/2'>Display turns</scene><br> | T : A:115_A:117 <scene name='Calculate_structure/Turn_114/2'>Display turns</scene><br> | ||
Key - '''H''': α-helix; '''B''': β-bridge; '''E''': β-strand; '''G''': 3<sub>10</sub>-helix; '''I''': π-helix; '''T''': 3-, 4-, 5-turn; '''S''': bend.<br> | Key - '''H''': α-helix; '''B''': β-bridge; '''E''': β-strand; '''G''': 3<sub>10</sub>-helix; '''I''': π-helix; '''T''': 3-, 4-, 5-turn; '''S''': bend.<br> | ||
=== Identify turns using resourses at RCSB === | |||
Use end note to open necessary sites.<ref>[http://www.pdb.org/pdb/explore/remediatedSequence.do?structureId=2MHR Open myohemerytherin at sequence page]; [http://www.pdb.org/pdb/explore/sequenceText.do?structureId=2MHR&chainId=A Open sequence and Secondary structure page]</ref> Follow directions given above. If you select one of the other methods of secondary structure annotations, you will observe that class VIb β-turns are among the structures being annotated. | |||
'''Domain 2 of chain A Glycogen Phosphorylase''' (<scene name='Calculate_structure/Domain_2/2'>Load Structure</scene>) - If the applet is not running the signed ver. 12 of Jmol, connect with it as you did above, and then click on the above green link.<br> | '''Domain 2 of chain A Glycogen Phosphorylase''' (<scene name='Calculate_structure/Domain_2/2'>Load Structure</scene>) - If the applet is not running the signed ver. 12 of Jmol, connect with it as you did above, and then click on the above green link.<br> | ||
