Sandbox 37: Difference between revisions

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==Introduction==
==Introduction==
[[Image:Papaya.jpg | right| thumb| ''Carica papaya'']]
[[Image:Papaya.jpg | right| thumb| ''Carica papaya'']]
<scene name='Sandbox_37/Main_scene/1'>Papain</scene> is a cysteine protease that is stable and active under a wide range of conditions. The enzyme present in the leaves, latex, roots, and fruit of the papaya plant(''Carica papaya'').  
<scene name='Sandbox_37/Main_scene/1'>Papain</scene> is a cysteine protease that is stable and active under a wide range of conditions. The enzyme present in the leaves, latex, roots, and fruit of the papaya plant (''Carica papaya'').<ref>http://www.britannica.com/EBchecked/topic/441803/papain</ref> The papain proteins are synthesized as inactive precursors that become active within two minutes of the plant being wounded and the latex is expelled.<ref>http://www.worthington-biochem.com/pap/default.html</ref>


==Structure==
==Structure==
<StructureSection load='9PAP' size='400' align='left' caption='Papain (9PAP)' scene=''></StructureSection>
<StructureSection load='9PAP' size='400' align='left' caption='Papain (9PAP)' scene=''></StructureSection> Papain consists of one polypepetide chain that is made up of 212 amino acids residues. There are three <scene name='Sandbox_37/Papain_disulfide_bonds/1'>disulfide bonds</scene> present in the enzyme that maintains the protein's structure.


<scene name='Sandbox_37/Papain_beta-alpha/1'>secondary structure</scene>
<scene name='Sandbox_37/Papain_beta-alpha/1'>secondary structure</scene>
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<scene name='Sandbox_37/Papain_hydrogen_bonds/1'>hydrogen bonds</scene>
<scene name='Sandbox_37/Papain_hydrogen_bonds/1'>hydrogen bonds</scene>


<scene name='Sandbox_37/Papain_disulfide_bonds/1'>disulfide bonds</scene>


==Mechanism==
==Mechanism==
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<ref>http://www.pdb.org/pdb/explore/remediatedSequence.do?structureId=1POP&params.chainEntityStrategyStr=all</ref>
<ref>http://www.pdb.org/pdb/explore/remediatedSequence.do?structureId=1POP&params.chainEntityStrategyStr=all</ref>
<ref>http://www.worthington-biochem.com/pap/default.html</ref>
<ref>http://en.wikipedia.org/wiki/Papain</ref>
<ref>http://en.wikipedia.org/wiki/Papain</ref>
<ref>http://www.pdb.org/pdb/explore.do?structureId=9PAP</ref>
<ref>http://www.pdb.org/pdb/explore.do?structureId=9PAP</ref>
<ref>http://www.britannica.com/EBchecked/topic/441803/papain</ref>
<ref>http://www.sigmaaldrich.com/life-science/metabolomics/enzyme-explorer/analytical-enzymes/papain.html</ref>
<ref>http://www.sigmaaldrich.com/life-science/metabolomics/enzyme-explorer/analytical-enzymes/papain.html</ref>


==References==
==References==
<references />
<references />

Revision as of 00:35, 14 November 2011

Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.

Papain

Introduction

File:Papaya.jpg
Carica papaya

Papain is a cysteine protease that is stable and active under a wide range of conditions. The enzyme present in the leaves, latex, roots, and fruit of the papaya plant (Carica papaya).[1] The papain proteins are synthesized as inactive precursors that become active within two minutes of the plant being wounded and the latex is expelled.[2]

Structure

Papain (9PAP)

Drag the structure with the mouse to rotate
Papain consists of one polypepetide chain that is made up of 212 amino acids residues. There are three disulfide bonds present in the enzyme that maintains the protein's structure.

secondary structure

hydrophobic residues

polar residues

ligands

van der Waals interactions

hydrogen bonds


Mechanism

File:Papain mechanism.jpg
Mechanism of papain catalysis

active site

Function

Inhibition

inhibitor

van der Waals

hydrogen bonds

[3] [4] [5] [6]

References