User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods: Difference between revisions
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* Submitted 1gi8 and the altered 3b8a to the Yale Morph [http://molmovdb.mbb.yale.edu/cgi-bin/beta.cgi beta server] | * Submitted 1gi8 and the altered 3b8a to the Yale Morph [http://molmovdb.mbb.yale.edu/cgi-bin/beta.cgi beta server] | ||
* When I received nothing back after several minutes I looked at the end of the sequences to see if they matched identially and noticed they didn't have the same C-terminus or even N-terminus. In fact what I thought were the same protein have several differences: | * When I received nothing back after several minutes I looked at the end of the sequences to see if they matched identially and noticed they didn't have the same C-terminus or even N-terminus. In fact what I thought were the same protein have several differences: | ||
<code> | |||
1ig8 1 ---DVPKELMQQIENFEKIFTVPTETLQAVTKHFISELEKGLSKKGGNIP 47 | 1ig8 1 ---DVPKELMQQIENFEKIFTVPTETLQAVTKHFISELEKGLSKKGGNIP 47 | ||
|||||||.:|...|.:|||.:|||:.|.||||.||.|||:||||||| | |||||||.:|...|.:|||.:|||:.|.||||.||.|||:||||||| | ||
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3b8a 449 AVIAALSEKRIAEGKSLGIIGA 470 | 3b8a 449 AVIAALSEKRIAEGKSLGIIGA 470 | ||
</code> | |||
According to help page, this shouldn't matter but they always seem to need to be identical to me for anything to work at the Yale Morph server. | According to help page, this shouldn't matter but they always seem to need to be identical to me for anything to work at the Yale Morph server. | ||
