1f88: Difference between revisions
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[[Image:1f88.png|left|200px]] | [[Image:1f88.png|left|200px]] | ||
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==About this Structure== | ==About this Structure== | ||
[[1f88]] is a 2 chain structure of [[Rhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. The March 2002 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Bacteriorhodopsin'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2002_3 10.2210/rcsb_pdb/mom_2002_3]. The October 2004 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''G Proteins'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2004_10 10.2210/rcsb_pdb/mom_2004_10]. The June 2005 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Carotenoid Oxygenase'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2005_6 10.2210/rcsb_pdb/mom_2005_6]. The April 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Adrenergic Receptors'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_4 10.2210/rcsb_pdb/mom_2008_4]. The March 2012 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Rhodopsin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2012_3 10.2210/rcsb_pdb/mom_2012_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F88 OCA]. | |||
==See Also== | |||
*[[Molecular Playground/Hexameric ClpX]] | |||
*[[Rhodopsin]] | |||
==Reference== | ==Reference== | ||
<ref group="xtra">PMID: | <ref group="xtra">PMID:010926528</ref><ref group="xtra">PMID:012824320</ref><ref group="xtra">PMID:014661965</ref><ref group="xtra">PMID:015595835</ref><ref group="xtra">PMID:016404618</ref><references group="xtra"/> | ||
[[Category: Adrenergic Receptors]] | [[Category: Adrenergic Receptors]] | ||
[[Category: Bacteriorhodopsin]] | [[Category: Bacteriorhodopsin]] | ||
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[[Category: G Proteins]] | [[Category: G Proteins]] | ||
[[Category: RCSB PDB Molecule of the Month]] | [[Category: RCSB PDB Molecule of the Month]] | ||
[[Category: Rhodopsin]] | |||
[[Category: Miyano, M.]] | [[Category: Miyano, M.]] | ||
[[Category: Okada, T.]] | [[Category: Okada, T.]] | ||
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[[Category: Signaling protein]] | [[Category: Signaling protein]] | ||
[[Category: Visual pigment]] | [[Category: Visual pigment]] | ||
Revision as of 04:36, 25 March 2012
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| 1f88, resolution 2.80Å (default scene) | |||||||||||||
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| Ligands: | HG, RET, ZN, MAN, NAG | ||||||||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Template:ABSTRACT PUBMED 10926528
About this Structure
1f88 is a 2 chain structure of Rhodopsin with sequence from Bos taurus. The March 2002 RCSB PDB Molecule of the Month feature on Bacteriorhodopsin by David S. Goodsell is 10.2210/rcsb_pdb/mom_2002_3. The October 2004 RCSB PDB Molecule of the Month feature on G Proteins by David S. Goodsell is 10.2210/rcsb_pdb/mom_2004_10. The June 2005 RCSB PDB Molecule of the Month feature on Carotenoid Oxygenase by David S. Goodsell is 10.2210/rcsb_pdb/mom_2005_6. The April 2008 RCSB PDB Molecule of the Month feature on Adrenergic Receptors by David S. Goodsell is 10.2210/rcsb_pdb/mom_2008_4. The March 2012 RCSB PDB Molecule of the Month feature on Rhodopsin by David Goodsell is 10.2210/rcsb_pdb/mom_2012_3. Full crystallographic information is available from OCA.
See Also
Reference
- Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le Trong I, Teller DC, Okada T, Stenkamp RE, Yamamoto M, Miyano M. Crystal structure of rhodopsin: A G protein-coupled receptor. Science. 2000 Aug 4;289(5480):739-45. PMID:10926528
- Gaulton A, Attwood TK. Motif3D: Relating protein sequence motifs to 3D structure. Nucleic Acids Res. 2003 Jul 1;31(13):3333-6. PMID:12824320
- Soyer OS, Dimmic MW, Neubig RR, Goldstein RA. Dimerization in aminergic G-protein-coupled receptors: application of a hidden-site class model of evolution. Biochemistry. 2003 Dec 16;42(49):14522-31. PMID:14661965 doi:10.1021/bi035097r
- Fowler CB, Pogozheva ID, Lomize AL, LeVine H 3rd, Mosberg HI. Complex of an active mu-opioid receptor with a cyclic peptide agonist modeled from experimental constraints. Biochemistry. 2004 Dec 21;43(50):15796-810. PMID:15595835 doi:10.1021/bi048413q
- Baleanu-Gogonea C, Karnik S. Model of the whole rat AT1 receptor and the ligand-binding site. J Mol Model. 2006 Feb;12(3):325-37. Epub 2006 Jan 11. PMID:16404618 doi:10.1007/s00894-005-0049-z
