NAC transcription factor: Difference between revisions

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1.Kubo et al (2005) Transcription swtiches for protoxylem and metaxylem vessel formation. Gene Dev.16, 1855-1860.
*1.Kubo et al (2005) Transcription swtiches for protoxylem and metaxylem vessel formation. Gene Dev.16, 1855-1860.


2.Wang et al (2011) On-Off switches for secondary cell wall biosynthesis. Mol plant. doi:10.1093/mp/ssr098
*2.Wang et al (2011) On-Off switches for secondary cell wall biosynthesis. Mol plant. doi:10.1093/mp/ssr098


3.Puranik et al. (2012) NAC proteins: regulation and role in stress tolerance. doi:10.1016/j.tplants.2012.2.14
*3.Puranik et al. (2012) NAC proteins: regulation and role in stress tolerance. doi:10.1016/j.tplants.2012.2.14


4.Shen et al (2009) A bioinformatic analysis of NAC genes for plant cell wall development in relation to lignocellulosic bioenergy production. Bioener.Res. 2,217-232.
*4.Shen et al (2009) A bioinformatic analysis of NAC genes for plant cell wall development in relation to lignocellulosic bioenergy production. Bioener.Res. 2,217-232.


5.Olsen et al (2005) NAC transcription factor : structurally distinct, functionally diverse. Trends Plant Sci.  10,79-87
*5.Olsen et al (2005) NAC transcription factor : structurally distinct, functionally diverse. Trends Plant Sci.  10,79-87


6.Ernst et al (2004)Structure of the conserved domain of ANAC,a member of the NAC family of transcription factors. EMBO J 5,297-303
*6.Ernst et al (2004)Structure of the conserved domain of ANAC,a member of the NAC family of transcription factors. EMBO J 5,297-303


7.Chen et al(2011)A structual view of the conserved domain of rice stress-responsive NAC1. Protein cell 2, 55-63
*7.Chen et al(2011)A structual view of the conserved domain of rice stress-responsive NAC1. Protein cell 2, 55-63


8.Puranik et al. (2011) Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet. Mol. Biotech.49,138-150.  
*8.Puranik et al. (2011) Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet. Mol. Biotech.49,138-150.  


9.Tran,L.S.P et al. (2009) Molecular characterization of stress-inducable GmNAC genes in soybean.Mol. Genet.Genomics 281.647-664.
*9.Tran,L.S.P et al. (2009) Molecular characterization of stress-inducable GmNAC genes in soybean.Mol. Genet.Genomics 281.647-664.


10.Le, D.T. et al. (2011) Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Res. 18, 263–276
*10.Le, D.T. et al. (2011) Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Res. 18, 263–276


11.Xie, Q. et al. (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 419, 167–170
*11.Xie, Q. et al. (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 419, 167–170


12. Greve, K. et al. (2003) Interactions between plant RING-H2 and plantspecific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochem. J. 371, 97–108
*12. Greve, K. et al. (2003) Interactions between plant RING-H2 and plantspecific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochem. J. 371, 97–108


13.Yamaguchi, M. et al. (2010) VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in
*13.Yamaguchi, M. et al. (2010) VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in
Arabidopsis. Plant Cell 22, 1249–1263
Arabidopsis. Plant Cell 22, 1249–1263


14.Yamaguchi, M. et al.  (2011)VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant Journal  66, 579-90
*14.Yamaguchi, M. et al.  (2011)VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. Plant Journal  66, 579-90


15.Xie, Q. et al. (1999) GRAB proteins, novel members of the NAC domain family, isolated by their interaction with a geminivirus protein. Plant Mol. Biol. 39, 647–656
*15.Xie, Q. et al. (1999) GRAB proteins, novel members of the NAC domain family, isolated by their interaction with a geminivirus protein. Plant Mol. Biol. 39, 647–656


16. Tran, L.S.P. et al. (2007) Co-expression of the stress inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. Plant J. 49, 46–63
*16. Tran, L.S.P. et al. (2007) Co-expression of the stress inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. Plant J. 49, 46–63


17. Hao, Y.J. et al. (2010) Plant NAC-type transcription factor proteins contain a NARD domain for repression of transcriptional activation. Planta 232, 1033–1043
*17. Hao, Y.J. et al. (2010) Plant NAC-type transcription factor proteins contain a NARD domain for repression of transcriptional activation. Planta 232, 1033–1043


18.Hao, Y.J. et al. (2011) Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J. 68, 302–313
*18.Hao, Y.J. et al. (2011) Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J. 68, 302–313


19.Welner, D.H et al.(2012)DNA binding by the plant specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors. Biochem J. doi:10.1092
*19.Welner, D.H et al.(2012)DNA binding by the plant specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors. Biochem J. doi:10.1092


20. Tran, L.S.P. et al. (2004) Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought responsive cis-element in the EARLY RESPONSIVE TO
*20. Tran, L.S.P. et al. (2004) Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought responsive cis-element in the EARLY RESPONSIVE TO
DEHYDRATION STRESS 1 promoter.  Plant Cell 16, 2481–2498
DEHYDRATION STRESS 1 promoter.  Plant Cell 16, 2481–2498


21. He, X.J. et al. (2005) AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J. 44, 903–916
*21. He, X.J. et al. (2005) AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J. 44, 903–916


22. Lu, P.L. et al. (2007) A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. Plant Mol. Biol. 63, 289–305
*22. Lu, P.L. et al. (2007) A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. Plant Mol. Biol. 63, 289–305


23. Kim, H.S. et al. (2007) Identification of a calmodulin-binding NAC protein (CBNAC) as a transcriptional repressor in Arabidopsis. J. Biol. Chem. 282, 36292–36302
*23. Kim, H.S. et al. (2007) Identification of a calmodulin-binding NAC protein (CBNAC) as a transcriptional repressor in Arabidopsis. J. Biol. Chem. 282, 36292–36302


24. Delessert, C. et al. (2005) The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. Plant J. 43, 745–757
*24. Delessert, C. et al. (2005) The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. Plant J. 43, 745–757


25.Yang S.D. et al. (2011) The Arabidopsis NAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via the COR/RD Genes. Plant Cell.  23, 2155–2168
*25.Yang S.D. et al. (2011) The Arabidopsis NAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via the COR/RD Genes. Plant Cell.  23, 2155–2168


26.Fang, Y. et al. (2008) Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol. Genet. Genomics 280, 535–54
*26.Fang, Y. et al. (2008) Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol. Genet. Genomics 280, 535–54


27.Christiansen, M.W. et al. (2011) Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved
*27.Christiansen, M.W. et al. (2011) Characterization of barley (Hordeum vulgare L.) NAC transcription factors suggests conserved
functions compared to both monocots and dicots. BMC Res. Notes 4,302
functions compared to both monocots and dicots. BMC Res. Notes 4,302


28 Kjaersgaard, T. et al. (2011) Senescence-associated barley NAC (NAM, ATAF1, 2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain. J. Biol. Chem. 286, 35418–35429
*28 Kjaersgaard, T. et al. (2011) Senescence-associated barley NAC (NAM, ATAF1, 2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain. J. Biol. Chem. 286, 35418–35429


29.Jensen, M.K. et al. (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling. Biochem. J. 426, 183–19
*29.Jensen, M.K. et al. (2010) The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling. Biochem. J. 426, 183–19


30.Kleinow, T. et al. (2009) NAC domain transcription factor ATAF1 interacts with SNF1-related kinases and silencing of its subfamily
*30.Kleinow, T. et al. (2009) NAC domain transcription factor ATAF1 interacts with SNF1-related kinases and silencing of its subfamily
causes severe developmental defects in Arabidopsis. Plant Sci. 177, 360–370
causes severe developmental defects in Arabidopsis. Plant Sci. 177, 360–370


31.Seo, P.J. et al. (2008) Membrane-bound transcription factors in plants. Trends Plant Sci. 13, 550–556
*31.Seo, P.J. et al. (2008) Membrane-bound transcription factors in plants. Trends Plant Sci. 13, 550–556


32. Kim, S.G. et al. (2010) Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice. Genomics 95, 56–6
*32. Kim, S.G. et al. (2010) Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice. Genomics 95, 56–6


33. Yamaguchi, M. et al. (2008) Vascular -related NAC-domain 7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Plant J. 55,652-664
*33. Yamaguchi, M. et al. (2008) Vascular -related NAC-domain 7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Plant J. 55,652-664


34. Zhong, R. et al. (2010). Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Molecular Plant 3, 1087-1103.
*34. Zhong, R. et al. (2010). Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Molecular Plant 3, 1087-1103.


35. Zhong, R. et al . (2010) Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors. Plant Physiol. 152, 1044-1055  
*35. Zhong, R. et al . (2010) Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors. Plant Physiol. 152, 1044-1055  


36. Zhong, R.et al. (2010). Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Molecular Plant 3, 1087-1103  
*36. Zhong, R.et al. (2010). Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Molecular Plant 3, 1087-1103  


37. Ohashi-Ito,K. et al. (2010). Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation. Plant Cell 22,3461–3473
37. Ohashi-Ito,K. et al. (2010). Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation. Plant Cell 22,3461–3473