IFG/DG-Cerezyme: Difference between revisions

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{{ABSTRACT_PUBMED_17187079}}
{{ABSTRACT_PUBMED_17187079}}
{{Clear}}
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<applet load='2v3d.pdb' size='500' frame='true' align='right' scene='2v3d/Al/2' />
 
<scene name='2v3d/Al/3'>Superimposition</scene> of the <font color='red'><b>native human acid β-glucosidase, expressed in cultured plant cells (pGlcCerase,</b></font> [[2v3f]]) on those of <font color='darkmagenta'><b>N-butyl-deoxynojirimycin/pGlcCerase</b></font> ([[2v3d]]),  <font color='lime'><b>N-nonyl-deoxynojirimycin/pGlcCerase</b></font> ([[2v3e]]), and <font color='cyan'><b>isofagomine/deglycosylated Cerezyme</b></font> (IFG/DG-Cerezyme, [[2nsx]]) reveals significant structural identity, neither of these ligands causes structural changes upon binding to the enzyme. The imino sugar of <font color='magenta'><b>N-butyl-deoxynojirimycin</b></font> <scene name='2v3d/Al/8'>(NB-DNJ)</scene> forms 7 hydrogen bonds and also makes several hydrophobic interactions with side chains of <font color='darkmagenta'><b>active site residues</b></font> ([[2v3d]]). The crystal structure of <font color='lime'><b>pGlcCerase in complex</b></font> with <font color='orange'><b>N-nonyl-deoxynojirimycin</b></font> <scene name='2v3d/Al/9'>(NN-DNJ)</scene> ([[2v3e]]) is very similar to that of <font color='magenta'><b>NB-DNJ</b></font>/<font color='darkmagenta'><b>pGlcCerase</b></font>. The exception is that longer chain of <font color='orange'><b>NN-DNJ</b></font> interacts with 2 additional residues Leu241 (<font color='lime'><b>labeled lime</b></font>) and Leu314 of symmetrically related monomer (not shown). Comparison of the structures of NB-DNJ/pGlcCerase ([[2v3d]]) and NN-DNJ/pGlcCerase ([[2v3e]]) with that of <scene name='2v3d/Nsx/1'>IFG/DG-Cerezyme</scene> ([[2nsx]]) shows that the pyranose-like ring forms a same number of hydrogen bonds with the enzyme in all three cases ([[2v3d]], [[2v3e]], and [[2nsx]]).
<scene name='2v3d/Al/3'>Superimposition</scene> of the <font color='red'><b>native human acid β-glucosidase, expressed in cultured plant cells (pGlcCerase,</b></font> [[2v3f]]) on those of <font color='darkmagenta'><b>N-butyl-deoxynojirimycin/pGlcCerase</b></font> ([[2v3d]]),  <font color='lime'><b>N-nonyl-deoxynojirimycin/pGlcCerase</b></font> ([[2v3e]]), and <font color='cyan'><b>isofagomine/deglycosylated Cerezyme</b></font> (IFG/DG-Cerezyme, [[2nsx]]) reveals significant structural identity, neither of these ligands causes structural changes upon binding to the enzyme. The imino sugar of <font color='magenta'><b>N-butyl-deoxynojirimycin</b></font> <scene name='2v3d/Al/8'>(NB-DNJ)</scene> forms 7 hydrogen bonds and also makes several hydrophobic interactions with side chains of <font color='darkmagenta'><b>active site residues</b></font> ([[2v3d]]). The crystal structure of <font color='lime'><b>pGlcCerase in complex</b></font> with <font color='orange'><b>N-nonyl-deoxynojirimycin</b></font> <scene name='2v3d/Al/9'>(NN-DNJ)</scene> ([[2v3e]]) is very similar to that of <font color='magenta'><b>NB-DNJ</b></font>/<font color='darkmagenta'><b>pGlcCerase</b></font>. The exception is that longer chain of <font color='orange'><b>NN-DNJ</b></font> interacts with 2 additional residues Leu241 (<font color='lime'><b>labeled lime</b></font>) and Leu314 of symmetrically related monomer (not shown). Comparison of the structures of NB-DNJ/pGlcCerase ([[2v3d]]) and NN-DNJ/pGlcCerase ([[2v3e]]) with that of <scene name='2v3d/Nsx/1'>IFG/DG-Cerezyme</scene> ([[2nsx]]) shows that the pyranose-like ring forms a same number of hydrogen bonds with the enzyme in all three cases ([[2v3d]], [[2v3e]], and [[2nsx]]).
==Disease==
==Disease==

Revision as of 11:55, 10 June 2012

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References

  1. Lieberman RL, Wustman BA, Huertas P, Powe AC Jr, Pine CW, Khanna R, Schlossmacher MG, Ringe D, Petsko GA. Structure of acid beta-glucosidase with pharmacological chaperone provides insight into Gaucher disease. Nat Chem Biol. 2007 Feb;3(2):101-7. Epub 2006 Dec 24. PMID:17187079 doi:https://dx.doi.org/10.1038/nchembio850
  2. Brumshtein B, Greenblatt HM, Butters TD, Shaaltiel Y, Aviezer D, Silman I, Futerman AH, Sussman JL. Crystal structures of complexes of N-butyl- and N-nonyl-deoxynojirimycin bound to acid beta-glucosidase: insights into the mechanism of chemical chaperone action in Gaucher disease. J Biol Chem. 2007 Sep 28;282(39):29052-8. Epub 2007 Jul 31. PMID:17666401 doi:10.1074/jbc.M705005200

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