Calculate structure: Difference between revisions

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<scene name='Calculate_structure/Domain_2/5'>Load Structure</scene> <br>

* <scene name='Calculate_structure/Domain_2_3turns2/7'>High light</scene> each of the one residue T segments (''e.g.'' T : A:488_A:488) in the summary below along with a few residues on each side of the single residue. Improve the view by displaying these <scene name='Calculate_structure/Domain_2_3turns3/8'>segments in isolation</scene>. (Remember ~~to display~~ the hbonds by running ''calculate hbonds structure'' from the console.) ~~Only one segment has a residue colored blue, and the other residues are colored as being part of a helix or sheet.~~ See summary below for a description of each of these T segments. All of these single residue segments are part of turns which are also involved in helices.

* <scene name='Calculate_structure/Domain_2_3turns2/6'>High light</scene> each of the one residue T segments (''e.g.'' T : A:488_A:488) in the summary below along with a few residues on each side of the single residue. Improve the view by displaying these <scene name='Calculate_structure/Domain_2_3turns3/9'>segments in isolation</scene>. (Remember the hbonds can be displayed by running ''calculate hbonds structure'' from the console.) See summary below for a description of each of these T segments. All of these single residue segments are part of turns which are also involved in helices.

* Reveal the nature of the <scene name='Calculate_structure/Domain_2_4turn/2'>remaining T segments</scene>. Displaying these <scene name='Calculate_structure/Domain_2_4turn2/5'>turns in isolation</scene> makes it easier to observe the hbonds. Inspecting them for hbonds (after running ''calculate hbonds structure'' from the console) reveals that all but one of these T segments are part of β-turns with the β-turns overlapping at two locations, and that segment T: 822-825 is part of a 4-turn and two 5-turns. All but two of the segments have at least one residue colored blue (Nitrogens involved in hbonds are also colored blue for ease of identifying the atoms involved in the hbonds.).

Calculate structure: Difference between revisions

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@@ Line 62: / Line 62: @@
 <scene name='Calculate_structure/Domain_2/5'>Load Structure</scene> <br>
-* <scene name='Calculate_structure/Domain_2_3turns2/7'>High light</scene> each of the one residue T segments (''e.g.'' T : A:488_A:488) in the summary below along with a few residues on each side of the single residue. Improve the view by displaying these <scene name='Calculate_structure/Domain_2_3turns3/8'>segments in isolation</scene>. (Remember to display the hbonds by running ''calculate hbonds structure'' from the console.) Only one segment has a residue colored blue, and the other residues are colored as being part of a helix or sheet. See summary below for a description of each of these T segments. All of these single residue segments are part of turns which are also involved in helices.
+* <scene name='Calculate_structure/Domain_2_3turns2/6'>High light</scene> each of the one residue T segments (''e.g.'' T : A:488_A:488) in the summary below along with a few residues on each side of the single residue. Improve the view by displaying these <scene name='Calculate_structure/Domain_2_3turns3/9'>segments in isolation</scene>. (Remember the hbonds can be displayed by running ''calculate hbonds structure'' from the console.) See summary below for a description of each of these T segments. All of these single residue segments are part of turns which are also involved in helices.
 * Reveal the nature of the <scene name='Calculate_structure/Domain_2_4turn/2'>remaining T segments</scene>. Displaying these <scene name='Calculate_structure/Domain_2_4turn2/5'>turns in isolation</scene> makes it easier to observe the hbonds. Inspecting them for hbonds (after running ''calculate hbonds structure'' from the console) reveals that all but one of these T segments are part of β-turns with the β-turns overlapping at two locations, and that segment T: 822-825 is part of a 4-turn and two 5-turns. All but two of the segments have at least one residue colored blue (Nitrogens involved in hbonds are also colored blue for ease of identifying the atoms involved in the hbonds.).