User:Eric Martz/Introduction to Structural Bioinformatics I: Difference between revisions
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===<font color='gray'>Section 8 - Optional: Contacts/Non-covalent Bonds</font>=== | ===<font color='gray'>Section 8 - Optional: Contacts/Non-covalent Bonds</font>=== | ||
#Use the ''Contacts'' tool in FirstGlance. | |||
#Change target selection to ''Residues/Groups''. | |||
#Click on something small to select it as a "target", such as a ligand, or a single amino acid. | |||
#Click the link to ''Show atoms contacting target''. | |||
#Click ''Center contacts''. | |||
#Uncheck ''Backbones''. | |||
#Zoom in (and click ''Return to Contacts'' if necessary). | |||
#Uncheck all categories of non-covalent bonds. | |||
#Check ''hydrogen-bonded non-water''. (Review [[Hydrogen_bonds#Donor_and_Acceptor_Atoms|hydrogen bonds]].) | |||
#Double click the hydrogen bond donor and acceptor atoms to insert a distance monitor. | |||
Describe the moiety you selected as a target. Include a showing a hydrogen bond. | |||
==VI. See Also== | ==VI. See Also== | ||
