Sandbox 37: Difference between revisions
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The <scene name='Sandbox_37/Matt_solvent/1'>Solvent</scene> , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions. | The <scene name='Sandbox_37/Matt_solvent/1'>Solvent</scene> , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions. | ||
The side chains that interact with the <scene name='Sandbox_37/Matt_ligand/1'>ligand</scene> are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue. | |||
Revision as of 23:44, 18 October 2012
Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.
The Secondary Structure of the protein shows alpha helices (green) and beta sheets (blue). The Hydrogen Bonds of chain A of the protein are highlighted in orange here. The Hydrophobic Interactions are shown here in purple. The Hydrophilic Interactions are shown here in black. The Solvent , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions. The side chains that interact with the ligand are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue. |
