Sandbox 32: Difference between revisions

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== '''Adenylate Kinase'''  (PDB ID #: 1ake)==
== '''Adenylate Kinase'''  (PDB ID #: 1ake)==


The <scene name='Sandbox_32/Chain_a/1'>A Chain</scene> by itself may be in a slightly different conformation than when it is attached to the B chain.
The <scene name='Sandbox_32/Chain_a/2'>A Chain</scene> by itself may be in a slightly different conformation than when it is <scene name='Sandbox_32/Both_chains/1'>attached</scene> to the B chain (as found in nature).


Adenylate Kinase contains both types of secondary structure, <scene name='Sandbox_32/Helices_sheets/1'>alpha helices and beta sheets</scene>.  In this scene, alpha helices are in light blue and beta sheets are in yellow (the red and blue molecules in the middle are the ligand).
Adenylate Kinase contains both types of secondary structure, <scene name='Sandbox_32/Helices_sheets/2'>alpha helices and beta sheets</scene>.  In this scene, alpha helices are in light blue and beta sheets are in yellow.


The <scene name='Sandbox_32/H_bonds_2/1'>hydrogen bonding</scene> highlighted in this scene shows us that... something something something.  The beta sheets appear to be parallel, as the H-bonds are not all aligned in one direction.
The <scene name='Sandbox_32/H_bonds_2/1'>hydrogen bonding</scene> highlighted in this scene shows us that... something something something.  The beta sheets appear to be parallel, as the H-bonds are not all aligned in one direction.