Interface analysis servers: Difference between revisions
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==COCOMAPS== | ==COCOMAPS== | ||
[https://www.molnac.unisa.it/BioTools/cocomaps/ COCOMAPS]<ref>Vangone A, Spinelli R, Scarano V, Cavallo L, Oliva R. COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes. Bioinformatics. 2011 Oct 15;27(20):2915-6. Epub 2011 Aug 27. | |||
[https://www.molnac.unisa.it/BioTools/cocomaps/ COCOMAPS]<ref>PMID: 21873642</ref> analyzes and visualizes interfaces in biological complexes (such as protein-protein, protein-DNA and protein-RNA complexes). The interface(s) to analyze are specified with the chain identifiers in the [[PDB file]]. Output includes three different contact maps, as well as tables reporting detailed information about the interacting residues (defined on the basis of a cut-off distance that can be customized by the user), the residues at the interfaces (defined on the basis of the buried surface upon complex formation), the inter-molecular H-bonds, the buried area, and the interface areas (both as Å<sup>2</sup> and percentages). | [http://www.ncbi.nlm.nih.gov/pubmed/21873642 PMID: 21873642]</ref> analyzes and visualizes interfaces in biological complexes (such as protein-protein, protein-DNA and protein-RNA complexes). The interface(s) to analyze are specified with the chain identifiers in the [[PDB file]]. Output includes three different contact maps, as well as tables reporting detailed information about the interacting residues (defined on the basis of a cut-off distance that can be customized by the user), the residues at the interfaces (defined on the basis of the buried surface upon complex formation), the inter-molecular H-bonds, the buried area, and the interface areas (both as Å<sup>2</sup> and percentages). | ||
===Comments=== | ===Comments=== | ||
