Interface analysis servers: Difference between revisions
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*Note that the ''Table of minimum distances'' lists only the minimum interatomic distance for each pair of residues, not all interatomic distances. The list of ''all'' can be obtained by clicking ''Open table'' under ''Distance table''. However it is not filterable or sortable at the time of this writing (March, 2012). | *Note that the ''Table of minimum distances'' lists only the minimum interatomic distance for each pair of residues, not all interatomic distances. The list of ''all'' can be obtained by clicking ''Open table'' under ''Distance table''. However it is not filterable or sortable at the time of this writing (March, 2012). | ||
==PDBsum== | |||
Every PDB structure page in Proteopedia links to [http://www.ebi.ac.uk/pdbsum/ PDBsum] under the structure window where it says 'Resources'. The [http://www.ebi.ac.uk/pdbsum/ PDBsum] page for every structure includes pre-calculated data summarizing protein-protein interactions and buried surface area, protein-nucleic acid, ligand interactions and available clefts, among other data. The data are accessible via links at the top where you will see 'Prot-prot', 'Ligands', 'Clefts,' etc. depending upon what is available. Note that the protein-nucleic acid interactions, if present, will be found on the page that is accessible via the 'DNA/RNA' link -- there will be a link for the NUCPLOT data. <br/> | |||
It is also possible to upload your own data and get a similar report generated that contains this information.<br/> | |||
==References== | ==References== | ||
<references/> | <references/> | ||
