Secondary structure: Difference between revisions
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<table width='410' align='right' cellpadding='10'><tr><td bgcolor='#eeeeee'><center>'''Secondary Structures of Sample Proteins'''<scene name='Secondary_structure/1dtg_ss/6'> (Initial scene)</scene></center></td></tr></table> | <table width='410' align='right' cellpadding='10'><tr><td bgcolor='#eeeeee'><center>'''Secondary Structures of Sample Proteins'''<scene name='Secondary_structure/1dtg_ss/6'> (Initial scene)</scene></center></td></tr></table> | ||
{{Clear}} | {{Clear}} | ||
==Viewing Secondary Structure== | |||
Most structures displayed in Proteopedia default to the cartoon view showing alpha helices and beta-sheets | |||
If you need to see them in any Proteopedia structure window or any Jmol window, '''click on the Jmol frank,'' and navigate the pop-up Jmol menu to first turn on the cartoons ('''style'''--->'"scheme'''--->'''cartoon''') and then color this cartoon representation as described above for added help ( '''Color cartoon''' ---> '''By Scheme''' -->'''Secondary Structure''') . | |||
If you want a convenient view of the secondary structure topology or wiring diagram, click on '''PDBsum'' below any structure on a PDB code page and navigate to the chain you are interested in from the left side of the main PDBsum page. | |||
==How Jmol Determines Secondary Structure== | ==How Jmol Determines Secondary Structure== | ||
===From PDB files=== | ===From PDB files=== | ||
