2hza: Difference between revisions

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New page: left|200px<br /><applet load="2hza" size="450" color="white" frame="true" align="right" spinBox="true" caption="2hza, resolution 2.10Å" /> '''Nickel-bound full-le...
 
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[[Image:2hza.gif|left|200px]]<br /><applet load="2hza" size="450" color="white" frame="true" align="right" spinBox="true"  
[[Image:2hza.gif|left|200px]]<br /><applet load="2hza" size="350" color="white" frame="true" align="right" spinBox="true"  
caption="2hza, resolution 2.10&Aring;" />
caption="2hza, resolution 2.10&Aring;" />
'''Nickel-bound full-length Escherichia coli NikR'''<br />
'''Nickel-bound full-length Escherichia coli NikR'''<br />


==Overview==
==Overview==
Metal ion homeostasis is critical to the survival of all cells. Regulation, of nickel concentrations in Escherichia coli is mediated by the NikR, repressor via nickel-induced transcriptional repression of the nickel, ABC-type transporter, NikABCDE. Here, we report two crystal structures of, nickel-activated E. coli NikR, the isolated repressor at 2.1 A resolution, and in a complex with its operator DNA sequence from the nik promoter at, 3.1 A resolution. Along with the previously published structure of, apo-NikR, these structures allow us to evaluate functional proposals for, how metal ions activate NikR, delineate the drastic conformational changes, required for operator recognition, and describe the formation of a second, metal-binding site in the presence of DNA. They also provide a rare set of, structural views of a ligand-responsive transcription factor in the, unbound, ligand-induced, and DNA-bound states, establishing a model system, for the study of ligand-mediated effects on transcription factor function.
Metal ion homeostasis is critical to the survival of all cells. Regulation of nickel concentrations in Escherichia coli is mediated by the NikR repressor via nickel-induced transcriptional repression of the nickel ABC-type transporter, NikABCDE. Here, we report two crystal structures of nickel-activated E. coli NikR, the isolated repressor at 2.1 A resolution and in a complex with its operator DNA sequence from the nik promoter at 3.1 A resolution. Along with the previously published structure of apo-NikR, these structures allow us to evaluate functional proposals for how metal ions activate NikR, delineate the drastic conformational changes required for operator recognition, and describe the formation of a second metal-binding site in the presence of DNA. They also provide a rare set of structural views of a ligand-responsive transcription factor in the unbound, ligand-induced, and DNA-bound states, establishing a model system for the study of ligand-mediated effects on transcription factor function.


==About this Structure==
==About this Structure==
2HZA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with 3CM and NI as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2HZA OCA].  
2HZA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=3CM:'>3CM</scene> and <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZA OCA].  


==Reference==
==Reference==
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Drennan, C.L.]]
[[Category: Drennan, C L.]]
[[Category: Schreiter, E.R.]]
[[Category: Schreiter, E R.]]
[[Category: 3CM]]
[[Category: 3CM]]
[[Category: NI]]
[[Category: NI]]
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[[Category: transcription factor]]
[[Category: transcription factor]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 12:03:56 2007''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:47:24 2008''