Sandbox Reserved 819: Difference between revisions
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__TOC__ | __TOC__ | ||
==The trimeric structure of Archaerhodopsin-2 | ==I kept a copy of your first version, tell me if you prefer it== | ||
==The trimeric structure of Archaerhodopsin-2 == | |||
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==Structure and functioning of the Retinal (RET)== | ===Structure and functioning of the Retinal (RET)=== | ||
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==The rhodopsin== | ===The rhodopsin=== | ||
The rhodopsin belongs to the CATH Superfamily 1.20.1070.10[http://www.cathdb.info/version/3.5.0/superfamily/1.20.1070.10] | |||
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==Ligands== | |||
==The bacterioruberin (22B)== | ===The bacterioruberin (22B)=== | ||
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==The 2,3-di-phytanyl-glycerol (L2P)== | ===The 2,3-di-phytanyl-glycerol (L2P)=== | ||
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It interacts with the aR2 surface and the carbohydrate <scene name='56/568017/Glc/1'>GLC</scene>. It binds to: the A chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the <scene name='56/568017/Tyr_85/1'>Tyrosine 85</scene>; the B chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the Tyrosine 85; the D chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the Tyrosine 85; the E chain thanks a covalent bond with the carbohydrate alpha-D-glucose 284 (GLC) and thanks a hydrogen bond with the Tyrosine 85.(others bonds exist like van-der-waals bonds [http://www.ebi.ac.uk/pdbe-site/pdbemotif/?tab=boundmolecule&pdb=2z55&ligandCode3letter=L2P]) | It interacts with the aR2 surface and the carbohydrate <scene name='56/568017/Glc/1'>GLC</scene>. It binds to: the A chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the <scene name='56/568017/Tyr_85/1'>Tyrosine 85</scene>; the B chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the Tyrosine 85; the D chain thanks a covalent bond with the carbohydrate alpha-D-glucose 281 (GLC) and thanks a hydrogen bond with the Tyrosine 85; the E chain thanks a covalent bond with the carbohydrate alpha-D-glucose 284 (GLC) and thanks a hydrogen bond with the Tyrosine 85.(others bonds exist like van-der-waals bonds [http://www.ebi.ac.uk/pdbe-site/pdbemotif/?tab=boundmolecule&pdb=2z55&ligandCode3letter=L2P]) | ||
===Saccharides=== | |||
== External ressources == | == External ressources == | ||
== References == | == References == | ||
<references /> | <references /> | ||
