4nrv: Difference between revisions
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{{STRUCTURE_4nrv| PDB=4nrv | SCENE= }} | {{STRUCTURE_4nrv| PDB=4nrv | SCENE= }} | ||
===Crystal Structure of non-edited human NEIL1=== | ===Crystal Structure of non-edited human NEIL1=== | ||
{{ABSTRACT_PUBMED_24382305}} | |||
==Function== | ==Function== | ||
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==Reference== | ==Reference== | ||
<references group="xtra"/><references/> | <ref group="xtra">PMID:024382305</ref><references group="xtra"/><references/> | ||
[[Category: Doublie, S.]] | [[Category: Doublie, S.]] | ||
[[Category: Prakash, A.]] | [[Category: Prakash, A.]] | ||
Revision as of 08:46, 5 February 2014
Crystal Structure of non-edited human NEIL1
Template:ABSTRACT PUBMED 24382305
Function
[NEIL1_HUMAN] Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, formamidopyrimidine (Fapy) and 5-hydroxyuracil. Has marginal activity towards 8-oxoguanine. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Has DNA glycosylase/lyase activity towards mismatched uracil and thymine, in particular in U:C and T:C mismatches.[1] [2] [3] [4]
About this Structure
4nrv is a 1 chain structure. Full crystallographic information is available from OCA.
Reference
- Prakash A, Carroll BL, Sweasy JB, Wallace SS, Doublie S. Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing. DNA Repair (Amst). 2014 Feb;14:17-26. doi: 10.1016/j.dnarep.2013.12.003. Epub, 2013 Dec 29. PMID:24382305 doi:https://dx.doi.org/10.1016/j.dnarep.2013.12.003
- ↑ Takao M, Kanno S, Kobayashi K, Zhang QM, Yonei S, van der Horst GT, Yasui A. A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue. J Biol Chem. 2002 Nov 1;277(44):42205-13. Epub 2002 Aug 27. PMID:12200441 doi:https://dx.doi.org/10.1074/jbc.M206884200
- ↑ Bandaru V, Sunkara S, Wallace SS, Bond JP. A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII. DNA Repair (Amst). 2002 Jul 17;1(7):517-29. PMID:12509226
- ↑ Hazra TK, Izumi T, Boldogh I, Imhoff B, Kow YW, Jaruga P, Dizdaroglu M, Mitra S. Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA. Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3523-8. PMID:11904416 doi:https://dx.doi.org/10.1073/pnas.062053799
- ↑ Dou H, Mitra S, Hazra TK. Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2. J Biol Chem. 2003 Dec 12;278(50):49679-84. Epub 2003 Sep 30. PMID:14522990 doi:https://dx.doi.org/10.1074/jbc.M308658200
