413d: Difference between revisions

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[[~~Image~~:413d.~~png|left|200px~~]]

==A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)==

== Structural highlights ==

<table><tr><td colspan='2'>[[413d]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=413D FirstGlance]. <br>

</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=413d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=413d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=413d RCSB], [http://www.ebi.ac.uk/pdbsum/413d PDBsum]</span></td></tr>

<table>

== Publication Abstract from PubMed ==

Here we demonstrate the presence of the A'-RNA conformation using the single crystal structure of a tridecamer: r(UGAGCUUCGGCUC). The average A'-RNA conformation deduced from X-ray fiber diffraction data had only been available previously, but now the presence of the A'-RNA conformation has been found in a single crystal structure for the first time. Statistical analysis showed that the A'-RNA conformation is distinguishable from the A-RNA conformation in a plot of the major groove width against the base pair inclination angle. The major groove of the A'-RNA conformation is wide enough to accommodate a protein or peptide while that of the A-RNA conformation is too narrow to do so. The presence of the A'-RNA conformation is significant for protein-RNA interaction.

~~{{STRUCTURE_413d| PDB=413d | SCENE= }}~~

A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).,Tanaka Y, Fujii S, Hiroaki H, Sakata T, Tanaka T, Uesugi S, Tomita K, Kyogoku Y Nucleic Acids Res. 1999 Feb 15;27(4):949-55. PMID:9927725<ref>PMID:9927725</ref>

~~===A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)===~~

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>

</div>

~~{{ABSTRACT_PUBMED_9927725}}~~

== References ==

~~==About this Structure==~~

__TOC__

~~[[413d]] is~~ a ~~1 chain structure. This structure supersedes~~ the ~~now removed PDB entry [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA].~~

</StructureSection>

==~~Reference~~==

<~~ref group="xtra">PMID:009927725<~~/~~ref~~><~~references group="xtra"~~/>

[[Category: Fujii, S.]]

[[Category: Hiroaki, H.]]

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@@ Line 1: / Line 1: @@
-[[Image:413d.png|left|200px]]
+==A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)==
+<StructureSection load='413d' size='340' side='right' caption='[[413d]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[413d]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=413D FirstGlance]. <br>
+</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=413d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=413d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=413d RCSB], [http://www.ebi.ac.uk/pdbsum/413d PDBsum]</span></td></tr>
+<table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Here we demonstrate the presence of the A'-RNA conformation using the single crystal structure of a tridecamer: r(UGAGCUUCGGCUC). The average A'-RNA conformation deduced from X-ray fiber diffraction data had only been available previously, but now the presence of the A'-RNA conformation has been found in a single crystal structure for the first time. Statistical analysis showed that the A'-RNA conformation is distinguishable from the A-RNA conformation in a plot of the major groove width against the base pair inclination angle. The major groove of the A'-RNA conformation is wide enough to accommodate a protein or peptide while that of the A-RNA conformation is too narrow to do so. The presence of the A'-RNA conformation is significant for protein-RNA interaction.
-{{STRUCTURE_413d|  PDB=413d  |  SCENE=  }}
+A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).,Tanaka Y, Fujii S, Hiroaki H, Sakata T, Tanaka T, Uesugi S, Tomita K, Kyogoku Y Nucleic Acids Res. 1999 Feb 15;27(4):949-55. PMID:9927725<ref>PMID:9927725</ref>
-===A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)===
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-{{ABSTRACT_PUBMED_9927725}}
+== References ==
+<references/>
-==About this Structure==
+__TOC__
-[[413d]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=373d 373d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=413D OCA].
+</StructureSection>
-==Reference==
-<ref group="xtra">PMID:009927725</ref><references group="xtra"/>
 [[Category: Fujii, S.]]
 [[Category: Hiroaki, H.]]