User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* [http://nucleobytes.com/index.php/ Nucleobytes] - DNA editor and [http://nucleobytes.com/index.php/4peaks 4peaks] sequence chromatogram viewer along with other mac software | * [http://nucleobytes.com/index.php/ Nucleobytes] - DNA editor and [http://nucleobytes.com/index.php/4peaks 4peaks] sequence chromatogram viewer along with other mac software | ||
*[http://pax-db.org/#!home PaxDb]: Protein Abundance Across Organisms | *[http://pax-db.org/#!home PaxDb]: Protein Abundance Across Organisms | ||
Random sequence generators: | |||
* http://users-birc.au.dk/biopv/php/fabox/random_sequence_generator.php | |||
* http://www.bioinformatics.org/sms2/random_dna.html | |||
* http://www.faculty.ucr.edu/~mmaduro/random.htm | |||
* http://molbiol.ru/eng/scripts/01_16.html | |||
Sequence shufflers: | |||
* http://emboss.sourceforge.net/ - shuffleseq from EMBOSS shuffles a set of sequences maintaining composition. | |||
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NGS: | NGS: | ||
* [http://homer.salk.edu/homer/basicTutorial/genomeBrowsers.html HOMER] - "Software for motif discovery and next-gen sequencing analysis". Nice in that it actually explains some of the details and advantages of the browsers and file types. | * [http://homer.salk.edu/homer/basicTutorial/genomeBrowsers.html HOMER] - "Software for motif discovery and next-gen sequencing analysis". Nice in that it actually explains some of the details and advantages of the browsers and file types. | ||
Nucleic acid system building: | |||
* [http://www.nupack.org/ NUPACK] - "NUPACK is a growing software suite for the analysis and design of nucleic acid systems." | |||
