User:Alice Harmon/Notes

Ref tag examples

<ref name = "Mustilli2002">PMID:12468729</ref> <ref name = "Fujii2007"/> <ref>PMID:12805596</ref>

Multiple frames on a page

To direct a green link to a specific frame do this:
1. name the frame. instead of <applet load='3ku2' , write |<applet name='left' load='3ku2'
2. add the frame name to the green link. Instead of >, write <scene name='56/562377/Holo-ikinase/1' target='left'>

===Pages needed=== edit calmodulin pages<Br> edit Ca2+/Calmodulin dependent protein kinase page<br> Create CaM-binding motifs<Br> also https://en.wikipedia.org/wiki/Calmodulin<br> see Proteopedia:Policy

ABI1 and ABI2 were discovered in genetic screens for mutants that were ABA insensitive. HAB1, HAB2, were discovered ... and PP2CA/AHG3. They are members of clade A of the plant protein phosphatase 2C family, and each has a C-terminal protein phosphatase 2C domain, and an N-terminal variable sequence<ref name = "Schweighofer2004">PMID:15130549</ref>.

PP2c catalytic domains have 11 conserved subdomains <ref>PMID:8819174</ref>.

Truncations of the noncatalytic N-terminal part of Arabidopsis PP2Cs ABI1 had only minor effects on phosphatase activity.Bertauche, N. et al. (1996) Protein phosphatase activity of abscisic acid insensitive 1 (ABI1) protein from Arabidopsis thaliana. Eur. J. Biochem. 241, 193–200

==add link to kinase domain page on== PKA pages<Br> Goodsells PKA article on PDB website

===Editing issues=== HTML tags don't work inside scene tags: superscript works fine here: Ca²⁺-bound CAD<br> but not here: <StructureSection load='3HX4' size='200' frame='true' align='left' caption='3hx4 - active TgCDPK1' scene = '55/559103/Holo-akinase/2' /> <scene name='55/559103/Holo-akinase_cad_rainbow/1'>1. Calcium-bound CAD or Ca²⁺-bound CAD In the green tag, the tag Ca²⁺ and the text before it are not rendered.

headings that are in scrollable sections are not included in the the page index

Can load scene using a different structure into a frame, but can't change the caption of the frame.

ABA signaling

Clearest picture of Pyr1 gate - latch is in Annu Reviews article unused: Cysteines in transparent kinase
Cysteines in space fill kinase
Cysteines in the complex

PP2C

Sheen PMID:9448270 Greengard PMID:16509582 https://en.wikipedia.org/wiki/Phosphatase

Proteopedia Page Contributors and Editors (what is this?)

Alice Harmon, Jaime Prilusky