4tp3: Difference between revisions
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''' | ==Crystal structure of the E. coli ribosome bound to dalfopristin. This file contains the 50S subunit of the second 70S ribosome with dalfopristin bound.== | ||
<StructureSection load='4tp3' size='340' side='right' caption='[[4tp3]], [[Resolution|resolution]] 2.90Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[4tp3]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Escherichia_coli_str._k-12_substr._mds42 Escherichia coli str. k-12 substr. mds42]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TP3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TP3 FirstGlance]. <br> | |||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOL:5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE'>DOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br> | |||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tp0|4tp0]], [[4tp1|4tp1]], [[4tp2|4tp2]]</td></tr> | |||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tp3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tp3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tp3 RCSB], [http://www.ebi.ac.uk/pdbsum/4tp3 PDBsum]</span></td></tr> | |||
<table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Streptogramin antibiotics are divided into type A and B streptogramins, which in combination can act synergistically. We compared the molecular interactions of the streptogramin combinations Synercid (type A: dalfopristin, type B: quinupristin) and NXL 103 (type A: flopristin, type B: linopristin) with the Escherichia coli 70S ribosome by x-ray crystallography. We further analyzed the activity of the streptogramin components individually and in combination. Streptogramin A and B components in Synercid and NXL 103 exhibit synergistic antimicrobial activity against certain pathogenic bacteria. However, in transcription-coupled translation assays, only combinations that include dalfopristin, the streptogramin A component of Synercid, show synergy. Notably, the diethylaminoethylsulfonyl group in dalfopristin reduces its activity, but is the basis for synergy in transcription-coupled translation assays before its rapid hydrolysis from the depsipeptide core. Replacement of the diethylaminoethylsulfonyl group in dalfopristin by a non-hydrolyzable group may therefore be beneficial for synergy. The absence of general streptogramin synergy in transcription-coupled translation assays suggests that synergistic antimicrobial activity of streptogramins can occur independently of streptogramin effects on translation. | |||
Synergy of streptogramin antibiotics occurs independently of their effects on translation.,Noeske J, Huang J, Olivier NB, Giacobbe RA, Zambrowski M, Cate JH Antimicrob Agents Chemother. 2014 Jun 23. pii: AAC.03389-14. PMID:24957822<ref>PMID:24957822</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli]] | |||
[[Category: Escherichia coli str. k-12 substr. mds42]] | |||
[[Category: Cate, J H.D.]] | |||
[[Category: Giacobbe, R A.]] | |||
[[Category: Huang, J.]] | |||
[[Category: Noeske, J.]] | |||
[[Category: Olivier, N B.]] | |||
[[Category: Zambrowski, M.]] | |||
[[Category: 23]] | |||
[[Category: 50]] | |||
[[Category: 70]] | |||
[[Category: Antibiotic]] | |||
[[Category: Exit]] | |||
[[Category: Peptidyl]] | |||
[[Category: Protein biosynthesis]] | |||
[[Category: Ribosomal subunit]] | |||
[[Category: Ribosome]] | |||
[[Category: Rna]] | |||
[[Category: Streptogramin]] | |||
[[Category: Transfer]] | |||
[[Category: Trna]] | |||
Revision as of 07:39, 30 July 2014
Crystal structure of the E. coli ribosome bound to dalfopristin. This file contains the 50S subunit of the second 70S ribosome with dalfopristin bound.
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