Sandbox 126: Difference between revisions
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PBP2a is composed of two domains: <font color='orange'> '''a non-penicillin binding <scene name='37/372726/Npb/4'>(NPB)</scene> domain'''</font> (residues 27-326) and a <font color='dodgerblue'> '''transpeptidase''' </font> <scene name='37/372726/Tp/5'>(TP)</scene> domain (residues 327-668). The NBP domain of PBP2a is anchored in the cell membrane, while the TP domain "sits" in the periplasm with its active site facing the inner surface of the cell wall. The active site contains a serine residue position 403 <scene name='37/372726/Ser403/2'>(Ser403)</scene> which catalyzes the cross-linking of the peptidoglycan rows with pentaglycine cross-links. | PBP2a is composed of two domains: <font color='orange'> '''a non-penicillin binding <scene name='37/372726/Npb/4'>(NPB)</scene> domain'''</font> (residues 27-326) and a <font color='dodgerblue'> '''transpeptidase''' </font> <scene name='37/372726/Tp/5'>(TP)</scene> domain (residues 327-668). The NBP domain of PBP2a is anchored in the cell membrane, while the TP domain "sits" in the periplasm with its active site facing the inner surface of the cell wall. The active site contains a serine residue position 403 <scene name='37/372726/Ser403/2'>(Ser403)</scene> which catalyzes the cross-linking of the peptidoglycan rows with pentaglycine cross-links. | ||
==='''Mechanism of | ==='''Catalytic Mechanism of Action of Transpeptidases'''=== | ||
(A) The peptidoglycan D-Ala D-Ala moiety enters the TP active site, which is in the TP domain (blue) (B) The active site serine residue (star) reacts with and breaks the peptide bond between the D-Ala residues. The terminal D-Ala residue exits the active site. The remaining D-Ala residue is covalently bound to the active site serine residue, and therefore, to TP. The incoming pentaglycine chain reacts with the bound D-Ala residue and is cross-linked to the D-Ala residue. (D) This results in cross-linking between adjacent peptidoglycan "sheets" and regeneration of the active site serine residue so it can catalyze another cross-linking reaction.[[Image: MechanismofPBP.jpg|thumb|alt= Alt text|Figure 2.Schematic showing Catalytic Mechanism of PBP2a |550px]] | |||
==='''Mechanism of Action of Beta-Lactam Antibiotics'''=== | ==='''Mechanism of Action of Beta-Lactam Antibiotics'''=== | ||