1e3d: Difference between revisions

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[[Image:1e3d.jpg|left|200px]]<br /><applet load="1e3d" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:1e3d.jpg|left|200px]]
caption="1e3d, resolution 1.80&Aring;" />
 
'''[NIFE] HYDROGENASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774'''<br />
{{Structure
|PDB= 1e3d |SIZE=350|CAPTION= <scene name='initialview01'>1e3d</scene>, resolution 1.80&Aring;
|SITE= <scene name='pdbsite=FE1:This+Cluster+Is+Produced+From+An+Fe4-S4+Possibly+Results+...'>FE1</scene>, <scene name='pdbsite=FE2:This+Cluster+Is+Produced+From+An+Fe4-S4+Possibly+Results+...'>FE2</scene>, <scene name='pdbsite=NI1:The+Active+Site+Contains+Two+Metals+Ni+And+Fe.+The+Fe+Ha+...'>NI1</scene> and <scene name='pdbsite=NI2:The+Active+Site+Contains+Two+Metals+Ni+And+Fe.+The+Fe+Ha+...'>NI2</scene>
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=FSX:BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON]+(AQUA)(GLU-O)IRON(II)'>FSX</scene>, <scene name='pdbligand=FNE:(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI)'>FNE</scene> and <scene name='pdbligand=H2S:HYDROSULFURIC ACID'>H2S</scene>
|ACTIVITY=
|GENE=
}}
 
'''[NIFE] HYDROGENASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
1E3D is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=F3S:'>F3S</scene>, <scene name='pdbligand=SF4:'>SF4</scene>, <scene name='pdbligand=FSX:'>FSX</scene>, <scene name='pdbligand=FNE:'>FNE</scene> and <scene name='pdbligand=H2S:'>H2S</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=FE1:This+Cluster+Is+Produced+From+An+Fe4-S4+Possibly+Results+...'>FE1</scene>, <scene name='pdbsite=FE2:This+Cluster+Is+Produced+From+An+Fe4-S4+Possibly+Results+...'>FE2</scene>, <scene name='pdbsite=NI1:The+Active+Site+Contains+Two+Metals+Ni+And+Fe.+The+Fe+Ha+...'>NI1</scene> and <scene name='pdbsite=NI2:The+Active+Site+Contains+Two+Metals+Ni+And+Fe.+The+Fe+Ha+...'>NI2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E3D OCA].  
1E3D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E3D OCA].  


==Reference==
==Reference==
[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3., Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA, J Biol Inorg Chem. 2001 Jan;6(1):63-81. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11191224 11191224]
[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3., Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA, J Biol Inorg Chem. 2001 Jan;6(1):63-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11191224 11191224]
[[Category: Desulfovibrio desulfuricans]]
[[Category: Desulfovibrio desulfuricans]]
[[Category: Protein complex]]
[[Category: Protein complex]]
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[[Category: molecular modelling]]
[[Category: molecular modelling]]


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