3dhu: Difference between revisions

Line 1:

~~[[Image:3dhu.png|left|200px]]~~

==Crystal structure of an alpha-amylase from Lactobacillus plantarum==

~~{{STRUCTURE_3dhu| PDB=3dhu | SCENE= }}~~

== Structural highlights ==

<table><tr><td colspan='2'>[[3dhu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DHU FirstGlance]. <br>

===Crystal structure of an alpha-amylase from Lactobacillus plantarum===

</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amy2, lp_0179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1590 Lactobacillus plantarum])</td></tr>

<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>

<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dhu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dhu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dhu RCSB], [http://www.ebi.ac.uk/pdbsum/3dhu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dhu TOPSAN]</span></td></tr>

==~~About this Structure~~==

<table>

[[3dhu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHU OCA].

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dhu_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

==See Also==

*[[~~Alpha-~~Amylase|~~Alpha-~~Amylase]]

*[[Amylase|Amylase]]

__TOC__

</StructureSection>

[[Category: Alpha-amylase]]

[[Category: Lactobacillus plantarum]]

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@@ Line 1: / Line 1: @@
-[[Image:3dhu.png|left|200px]]
+==Crystal structure of an alpha-amylase from Lactobacillus plantarum==
+<StructureSection load='3dhu' size='340' side='right' caption='[[3dhu]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-{{STRUCTURE_3dhu|  PDB=3dhu  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3dhu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DHU FirstGlance]. <br>
-===Crystal structure of an alpha-amylase from Lactobacillus plantarum===
+</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amy2, lp_0179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1590 Lactobacillus plantarum])</td></tr>
+<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>
+<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dhu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dhu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dhu RCSB], [http://www.ebi.ac.uk/pdbsum/3dhu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dhu TOPSAN]</span></td></tr>
-==About this Structure==
+<table>
-[[3dhu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHU OCA].
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dhu_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Alpha-Amylase|Alpha-Amylase]]
+*[[Amylase|Amylase]]
+__TOC__
+</StructureSection>
 [[Category: Alpha-amylase]]
 [[Category: Lactobacillus plantarum]]