2yzn: Difference between revisions

Line 1:

[[Image:~~2yzn~~.~~png~~|~~left~~|~~200px~~]]

==Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.==

== Structural highlights ==

<table><tr><td colspan='2'>[[2yzn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YZN FirstGlance]. <br>

</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene><br>

<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yzg|2yzg]]</td></tr>

<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>

<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yzn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yzn RCSB], [http://www.ebi.ac.uk/pdbsum/2yzn PDBsum], [http://www.topsan.org/Proteins/RSGI/2yzn TOPSAN]</span></td></tr>

<table>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzn_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

~~{{STRUCTURE_2yzn| PDB~~=~~2yzn | SCENE~~= }}

==See Also==

*[[D-alanine-D-alanine ligase|D-alanine-D-alanine ligase]]

==~~=Crystal structure of~~ D-alanine:D-~~Alanine Ligase with AMPPNP from Thermus thermophilus HB8.===~~

__TOC__

</StructureSection>

~~{{ABSTRACT_PUBMED_019770507}}~~

~~==About this Structure==~~

~~[[2yzn]] is a 3 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZN OCA].~~

[[Category: D-alanine--D-alanine ligase]]

[[Category: Thermus thermophilus]]

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@@ Line 1: / Line 1: @@
-[[Image:2yzn.png|left|200px]]
+==Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.==
+<StructureSection load='2yzn' size='340' side='right' caption='[[2yzn]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2yzn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YZN FirstGlance]. <br>
+</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene><br>
+<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yzg|2yzg]]</td></tr>
+<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
+<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yzn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yzn RCSB], [http://www.ebi.ac.uk/pdbsum/2yzn PDBsum], [http://www.topsan.org/Proteins/RSGI/2yzn TOPSAN]</span></td></tr>
+<table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzn_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
-{{STRUCTURE_2yzn|  PDB=2yzn  |  SCENE=  }}
+==See Also==
+*[[D-alanine-D-alanine ligase|D-alanine-D-alanine ligase]]
-===Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8.===
+__TOC__
+</StructureSection>
-{{ABSTRACT_PUBMED_019770507}}
-==About this Structure==
-[[2yzn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZN OCA].
 [[Category: D-alanine--D-alanine ligase]]
 [[Category: Thermus thermophilus]]