4uy8: Difference between revisions

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'''Unreleased structure'''
==Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome==
<StructureSection load='4uy8' size='340' side='right' caption='[[4uy8]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4uy8]] is a 34 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UY8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UY8 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4uy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uy8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4uy8 RCSB], [http://www.ebi.ac.uk/pdbsum/4uy8 PDBsum]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Elevated levels of the free amino acid L-tryptophan (L-Trp) trigger expression of the tryptophanase tnaCAB operon in E. coli. Activation depends on tryptophan-dependent ribosomal stalling during translation of the upstream TnaC peptide. Here, we present a cryoelectron microscopy (cryo-EM) reconstruction at 3.8 A resolution of a ribosome stalled by the TnaC peptide. Unexpectedly, we observe two L-Trp molecules in the ribosomal exit tunnel coordinated within composite hydrophobic pockets formed by the nascent TnaC peptide and the tunnel wall. As a result, the peptidyl transferase center (PTC) adopts a distinct conformation that precludes productive accommodation of release factor 2 (RF2), thereby inducing translational stalling. Collectively, our results demonstrate how the translating ribosome can act as a small molecule sensor for gene regulation.


The entry 4uy8 is ON HOLD  until Paper Publication
Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.,Bischoff L, Berninghausen O, Beckmann R Cell Rep. 2014 Oct 7. pii: S2211-1247(14)00779-7. doi:, 10.1016/j.celrep.2014.09.011. PMID:25310980<ref>PMID:25310980</ref>


Authors: Bischoff, L., Berninghausen, O., Beckmann, R.
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
Description: Molecular basis for the ribosome functioning as a L-tryptophan sensor -Cryo-EM structure of a TnaC stalled E.coli ribosome
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Beckmann, R.]]
[[Category: Berninghausen, O.]]
[[Category: Bischoff, L.]]
[[Category: Ribosome]]
[[Category: Tnac]]
[[Category: Translation regulation]]
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